| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,979,812 – 13,979,911 |
| Length | 99 |
| Max. P | 0.623040 |
| Location | 13,979,812 – 13,979,911 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 72.43 |
| Shannon entropy | 0.47151 |
| G+C content | 0.49897 |
| Mean single sequence MFE | -28.92 |
| Consensus MFE | -13.46 |
| Energy contribution | -13.43 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.623040 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13979812 99 - 27905053 GUGGAGUUUGAACUGUGUUAACCGCGUCAUGUUCACAAAUUUGUUUGCAUUCCGCAACGGUGGUCGCCGCCACCACUGACAAAAU-GCUCAAAGCCCAAA .(((..(((((.(..(((((...(((..((((..(((....)))..))))..)))...((((((....))))))..)))))....-).)))))..))).. ( -30.10, z-score = -1.69, R) >droSim1.chr3R 20014417 99 + 27517382 GUGGAGUUGGAACUGUGUUAACCGCGUCAUGUUCACAAAUUUGUUUGCAUUCCGCAACGGUGGUCGCCGCCACCACUGACAAAAU-GCUCAAAGCCCAAA (.((..((((.....(((((...(((..((((..(((....)))..))))..)))...((((((....))))))..)))))....-.).)))..)))... ( -28.50, z-score = -0.73, R) >droSec1.super_12 1950099 99 + 2123299 GUGGAGUUGAAACUGUGUUAACCGCGUCAUGUUCACAAAUUUGUUUGCAUUCCGCAACGGUGGUCGCCGCCACCAAUGACAAAAU-GCUCAAAGCCCAAA (.((..((((.....(((((...(((..((((..(((....)))..))))..)))...((((((....))))))..)))))....-..))))..)))... ( -29.20, z-score = -1.57, R) >droAna3.scaffold_13340 11952986 86 + 23697760 ------GUGGAGCUGUA--AACUGCGUCAUGUUCACAAAUUUGUUUGCAUUCCACAACGGUGGUCGCCGCCGCC---GACAAAAUGGCCCAGAGCCC--- ------((((((.((((--(((....................)))))))))))))..(((((((....))))))---).......(((.....))).--- ( -28.65, z-score = -1.62, R) >droGri2.scaffold_14830 3710446 82 + 6267026 ------GGGGAGCUGUA--AACUGUGGCAUGUUCACAAAUUUGUUAGCAUUCCACGUCGGUUGGGGCCACUGAC---AAAACGGCCGCCCAAA------- ------(((..(((((.--....((((.(((((.(((....))).))))).))))((((((.(....)))))))---...)))))..)))...------- ( -32.10, z-score = -2.47, R) >droVir3.scaffold_13047 12544652 79 + 19223366 ------AUGGAGCUGUU--AACUGUGGCAUGUUCACAAAUUUGUUAGCAUUCCACAACGUU---GGCCACUGAC---AAAACGGCCGCCCAAA------- ------.(((.((....--...(((((.(((((.(((....))).))))).))))).....---((((......---.....)))))))))..------- ( -25.00, z-score = -1.95, R) >consensus ______UUGGAACUGUG__AACCGCGUCAUGUUCACAAAUUUGUUUGCAUUCCACAACGGUGGUCGCCGCCACC___GACAAAAU_GCCCAAAGCCC___ .......(((.............(((..((((..(((....)))..))))..)))...(((((......)))))..............)))......... (-13.46 = -13.43 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:24:41 2011