| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,972,632 – 13,972,729 |
| Length | 97 |
| Max. P | 0.854915 |
| Location | 13,972,632 – 13,972,729 |
|---|---|
| Length | 97 |
| Sequences | 8 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 94.12 |
| Shannon entropy | 0.11140 |
| G+C content | 0.45576 |
| Mean single sequence MFE | -24.52 |
| Consensus MFE | -23.56 |
| Energy contribution | -23.38 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.854915 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13972632 97 - 27905053 GGAAUCGACAAGUAAAAGAGCAAAACGCA-------ACAACGAGAAAUUGAAAAGCCACAAGUCAUCUCAGCUGGUGGCUUAAAAGGCGCGUGCUAAGCCAUUC ..................((((...(((.-------....(((....)))..(((((((.(((.......))).))))))).....)))..))))......... ( -23.30, z-score = -1.14, R) >droSim1.chr3R 20007263 97 + 27517382 GGAAUCGACAAGUAAAAGAGCAAAACGCA-------ACAACGAGAAAUUGAAAAGCCACAAGUCAUCUCAGCUGGUGGCUUAAAAGGCGCGUGCUAAGCCAUUC ..................((((...(((.-------....(((....)))..(((((((.(((.......))).))))))).....)))..))))......... ( -23.30, z-score = -1.14, R) >droSec1.super_12 1942976 97 + 2123299 GGAAUCGACAAGUAAAAGAGCAAAACGCA-------ACAACGAGAAAUUGAAAAGCCACAAGUCAUCUCAGCUGGUGGCUUAAAAGGCGCGUGCUAAGCCAUUC ..................((((...(((.-------....(((....)))..(((((((.(((.......))).))))))).....)))..))))......... ( -23.30, z-score = -1.14, R) >droYak2.chr3R 2569503 97 - 28832112 GGAAUCGACAAGUAAAAGAGCAAAACGCA-------AUAACGAGAAAUUGAAAAGCCACAAGUCAUCUCAGCUGGUGGCUUAAAAGGCGCGUGCUAAGCCAUUC ..................((((...(((.-------....(((....)))..(((((((.(((.......))).))))))).....)))..))))......... ( -23.30, z-score = -1.28, R) >droEre2.scaffold_4770 10082948 97 + 17746568 GGAAUCGACAAGUAAAAGAGCAAAACGCA-------ACAACGAGAAAUUGAAAAGCCACAAGUCAUCUCAGCUGGUGGCUUAAAAGGCGCGUGCUAAGCCAUUC ..................((((...(((.-------....(((....)))..(((((((.(((.......))).))))))).....)))..))))......... ( -23.30, z-score = -1.14, R) >droAna3.scaffold_13340 11946627 97 + 23697760 GCGACCGACAAGCAAAAGAGCAAAACGCA-------ACAACGAGAAAUUGAAAAGCCACAAGUCAUCUCAGCUGGUGGCUUAAAAGGCGCGUGCUAAGCCAUUC ((.........((......))...((((.-------....(((....)))....(((..((((((((......))))))))....))))))))).......... ( -24.30, z-score = -0.83, R) >dp4.chr2 29062391 104 - 30794189 GAAGUCGACAAGUAAAAGAGCAAAACGCGCAACAACACAACAAGAAAUUGAAAAGCCACAAGUCAUCUCAGCUGGUGGCUUAAAAGGCGCGUGCUAAGCCAUUC ..................(((...((((((..........(((....)))..(((((((.(((.......))).))))))).....)))))))))......... ( -27.70, z-score = -2.34, R) >droPer1.super_6 4386590 104 - 6141320 GAAGUCGACAAGUAAAAGAGCAAAACGCGCAACAACACAACAAGAAAUUGAAAAGCCACAAGUCAUCUCAGCUGGUGGCUUAAAAGGCGCGUGCUAAGCCAUUC ..................(((...((((((..........(((....)))..(((((((.(((.......))).))))))).....)))))))))......... ( -27.70, z-score = -2.34, R) >consensus GGAAUCGACAAGUAAAAGAGCAAAACGCA_______ACAACGAGAAAUUGAAAAGCCACAAGUCAUCUCAGCUGGUGGCUUAAAAGGCGCGUGCUAAGCCAUUC ..................((((...(((............(((....)))..(((((((.(((.......))).))))))).....)))..))))......... (-23.56 = -23.38 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:24:39 2011