| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,857,823 – 7,857,892 |
| Length | 69 |
| Max. P | 0.864781 |
| Location | 7,857,823 – 7,857,892 |
|---|---|
| Length | 69 |
| Sequences | 3 |
| Columns | 69 |
| Reading direction | forward |
| Mean pairwise identity | 56.52 |
| Shannon entropy | 0.61092 |
| G+C content | 0.33511 |
| Mean single sequence MFE | -11.67 |
| Consensus MFE | -7.31 |
| Energy contribution | -6.20 |
| Covariance contribution | -1.11 |
| Combinations/Pair | 1.43 |
| Mean z-score | -0.71 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.864781 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7857823 69 + 23011544 UGCUUCUUGUACUUCUGAUUUCAAAUACAUUUGCGAGGCAAAUGAAAAUGUAUAGUAAACAGAUAUAUA .......((((..((((.(((...((((((((.............))))))))...)))))))..)))) ( -9.62, z-score = -0.06, R) >droYak2.chr2L 17286319 69 - 22324452 UGAUGGUUGCACUGCUUUUCACAAGUUCAUUUGCGAGGCAGAUGAUAAUACAUUAUAAACACAAACAUA ((((((((((((((((..((.((((....)))).))))))).)).)))).))))).............. ( -12.80, z-score = -1.11, R) >droAna3.scaffold_12916 16162427 68 + 16180835 UAACUGGUGUACCAGAGAACUUUACUUUGUUUGCCAGGCAAACACAAACAAAUAAUAGAACAGUCUAG- ...((((....))))............(((((((...)))))))...........((((....)))).- ( -12.60, z-score = -0.96, R) >consensus UGAUUGUUGUACUACUGAUCUCAAAUUCAUUUGCGAGGCAAAUGAAAAUAAAUAAUAAACAAAUAUAUA ...........................(((((((...)))))))......................... ( -7.31 = -6.20 + -1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:24:33 2011