| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,966,105 – 13,966,196 |
| Length | 91 |
| Max. P | 0.543051 |
| Location | 13,966,105 – 13,966,196 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 86.27 |
| Shannon entropy | 0.25009 |
| G+C content | 0.49703 |
| Mean single sequence MFE | -30.15 |
| Consensus MFE | -24.25 |
| Energy contribution | -24.87 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.543051 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13966105 91 - 27905053 ----CCAAAUCGAGCGGCAAUAAUUUCAUGAUUGAUGGCCGCGUAGUUCGGUUAACGGCUGCUGUUGAUCGUCGAUCGAAAA----UAGAGGAUUGAGU--- ----((...(((((((((..(((((....)))))...)))))......((((((((((...))))))))))))))((.....----..)))).......--- ( -25.70, z-score = -0.79, R) >droSim1.chrU 7267539 91 + 15797150 ----CCAAAUCGAGCGGCAAUAAUUUCAUGAUUGAUGGCCGCGUAGUUCGGUUAACGGCGGCUGUUGAUCGCCGAUCGAAAA----UAGAGGAUUGUGC--- ----.....((((.((((.((......))(((..((((((((...(((.....))).))))))))..))))))).))))...----.............--- ( -29.40, z-score = -1.34, R) >droSec1.super_12 1932075 91 + 2123299 ----CCAAAUCGAGCGGCAAUAAUUUCAUGAUUGAUGGCCGCGUAGUUCGGUUAACGGCGGCUGUUGAUCGUCGAUCGAAAA----UAGAGGAUUGUGC--- ----.....((((.((((.((......))(((..((((((((...(((.....))).))))))))..))))))).))))...----.............--- ( -26.70, z-score = -0.73, R) >droYak2.chr3R_random 1946904 89 - 3277457 ----CCAAAUCGAGCGGCAAUAAUUUCAUGAUUGAUGGCCGCGUAGUGCGGUUAACGGCGGCCGUUGAUCGCCGAUCGAAAA----CAGUGGAUUGU----- ----(((..((((.((((.((......))(((..((((((((...((.......)).))))))))..))))))).))))...----...))).....----- ( -33.80, z-score = -2.28, R) >droEre2.scaffold_4770 10076835 94 + 17746568 ----CCAAAUCGAGCGGCAAUAAUUUCAUGAUUGAUGGCCGCGUAGUGCGGUUAACGGCGGCUGUUGAUCGCCGAUCCAAAA----CAGUGGAUUGCUGAUC ----....(((.((((((.((......))(((..((((((((...((.......)).))))))))..))))))((((((...----...)))))))))))). ( -32.40, z-score = -1.59, R) >droAna3.scaffold_13340 11941223 99 + 23697760 CCAUGGAAAUGUUGCGGCAAUAAUUUCAUGAUUGAUGGCCGCGUAGUUCAGUUAACGGCGGCUGUUGAUCGUCGACCGUAGAUCUUUGGGGGAUCGGGG--- ((..........(((((........(((((((..((((((((...(((.....))).))))))))..))))).)))))))(((((.....)))))))..--- ( -32.90, z-score = -1.42, R) >consensus ____CCAAAUCGAGCGGCAAUAAUUUCAUGAUUGAUGGCCGCGUAGUUCGGUUAACGGCGGCUGUUGAUCGCCGAUCGAAAA____UAGAGGAUUGUGC___ .........((((.((((.((......))(((..((((((((...((.......)).))))))))..))))))).))))....................... (-24.25 = -24.87 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:24:36 2011