| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,949,573 – 13,949,634 |
| Length | 61 |
| Max. P | 0.746980 |
| Location | 13,949,573 – 13,949,634 |
|---|---|
| Length | 61 |
| Sequences | 5 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 98.36 |
| Shannon entropy | 0.02775 |
| G+C content | 0.27213 |
| Mean single sequence MFE | -6.42 |
| Consensus MFE | -6.58 |
| Energy contribution | -6.42 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.08 |
| Mean z-score | -0.94 |
| Structure conservation index | 1.02 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.746980 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13949573 61 - 27905053 ACACCGAAUAUGUAUAUUUUUAUAAAGAUUGCUUUUUCGCCUCUUUGUUUGAAAUCAUUUU ................(((..(((((((..((......)).)))))))..)))........ ( -6.80, z-score = -1.18, R) >droSim1.chr3R 19982845 61 + 27517382 ACACCGAAUAUGUAUAUUUUUAUAAAGAUUGCUUUUUCGCCUCUUUGUUUGAAAUCAUUUU ................(((..(((((((..((......)).)))))))..)))........ ( -6.80, z-score = -1.18, R) >droSec1.super_12 1915733 61 + 2123299 ACACCGAAUAUGUAUAUUUUUAUAAAGAUUGCUUUUUCGCCUCUUUGUUUGAAAUCAUUUU ................(((..(((((((..((......)).)))))))..)))........ ( -6.80, z-score = -1.18, R) >droYak2.chr3R 2551044 61 - 28832112 ACACCGAAUAUGUAUAUUUUUAUAAAGGUUGCCUUUUCGCCUCUUUGUUUGAAAUCAUUUU ................(((..(((((((..((......)).)))))))..)))........ ( -5.40, z-score = -0.02, R) >droEre2.scaffold_4770 10060281 61 + 17746568 ACACCGAAUAUGUAUAUUUUUAUAAAGAUUGCCUUUUCGCCUCUUUGUUUGAAAUCAUUUU ................(((..(((((((..((......)).)))))))..)))........ ( -6.30, z-score = -1.12, R) >consensus ACACCGAAUAUGUAUAUUUUUAUAAAGAUUGCUUUUUCGCCUCUUUGUUUGAAAUCAUUUU ................(((..(((((((..((......)).)))))))..)))........ ( -6.58 = -6.42 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:24:33 2011