| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,927,821 – 13,927,920 |
| Length | 99 |
| Max. P | 0.893290 |
| Location | 13,927,821 – 13,927,920 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 73.12 |
| Shannon entropy | 0.48720 |
| G+C content | 0.48506 |
| Mean single sequence MFE | -21.94 |
| Consensus MFE | -12.35 |
| Energy contribution | -12.63 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.893290 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13927821 99 + 27905053 AGUUCCAGCUUUCGGCUGACAUUUUGAAGCGA------AAUGUCAGUCACAGCUCAA-CAUACCGCCAUCAUUGUCCGUCCGUCCGUUUGUCGCCUUUUUAUUUUA .(((..((((...(((((((((((((...)))------))))))))))..)))).))-).....((...((.((..(....)..))..))..))............ ( -21.50, z-score = -2.12, R) >droSim1.chr3R 19959401 100 - 27517382 AGUUCCAGCUUUCGGCUGACAUUUUGAAGCGA------AAUGUCAGUCACAGCUUAAACAUCCCGCCAUCAUCGUCCGUCCGUCCGUUUGUCGCCUUUUUAUUUUA .(((..((((...(((((((((((((...)))------))))))))))..))))..))).....((...((.((..(....)..))..))..))............ ( -24.90, z-score = -3.71, R) >droSec1.super_12 1884921 100 - 2123299 AGUUCCAGCUUUCGGCUGACAUUUUGAAGCGA------AAUGUCAGUCACAGCUUAAGCAUCCCGCCAUCAUCGUCCGUCCGUCCGUUUGUCGUCUUUUUAUUUUA .(((..((((...(((((((((((((...)))------))))))))))..))))..)))....((.((....((..(....)..))..)).))............. ( -24.60, z-score = -3.51, R) >droYak2.chr3R 2524753 88 + 28832112 AGUUCCAGCUUUCGGCUGACAUUUUGAAGCGA------AAUGUCAGUCACAGCUCAA-CAUCCCGCCAUCGUCGUCGGGCCGUCCGUUUGUCGCC----------- .(((..((((...(((((((((((((...)))------))))))))))..)))).))-)..((((.(......).))))................----------- ( -25.60, z-score = -1.67, R) >droEre2.scaffold_4770 10038947 94 - 17746568 AGUUCCAGCUUUCGGCUGACAUUUUGAAGCGACAUUUGAAUGUCAGUCACCGCUCAA-CAUCCCGCCAUCAUCGUCGGUCCGUCCGUUUGUCGCC----------- .(((..(((....(((((((((.(..((......))..))))))))))...))).))-).....((...((....(((.....)))..))..)).----------- ( -20.70, z-score = -0.16, R) >droVir3.scaffold_13047 12481801 85 - 19223366 AGUGCCA-CAGUUGUCUGACAUUUGAGAUUUGAGGCGAAAUGUCAGUCACUGCUCAAAAGUCCGUUCGUU-UCACCGCUUUACUCUA------------------- .......-((((.(.(((((((((..(........).))))))))).)))))....(((((.........-.....)))))......------------------- ( -14.34, z-score = 1.38, R) >consensus AGUUCCAGCUUUCGGCUGACAUUUUGAAGCGA______AAUGUCAGUCACAGCUCAA_CAUCCCGCCAUCAUCGUCCGUCCGUCCGUUUGUCGCC___________ ......((((...((((((((((...............))))))))))..)))).................................................... (-12.35 = -12.63 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:24:27 2011