| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,917,797 – 13,917,903 |
| Length | 106 |
| Max. P | 0.815283 |
| Location | 13,917,797 – 13,917,903 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 88.47 |
| Shannon entropy | 0.20033 |
| G+C content | 0.36608 |
| Mean single sequence MFE | -27.51 |
| Consensus MFE | -18.12 |
| Energy contribution | -18.76 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.50 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.815283 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13917797 106 + 27905053 GACUCCAUUUGCAUUUCGAAAGAAACCUGGUUUUUUU--AUGAAGCCGUCGAAUGUUCGAGAAGUCAAUUGAAUUUCGUGGUUUACCUCCAUUCAAUAUGAAUGGAAA (((..........((((....))))...((((((...--..)))))))))(((.((((((........)))))))))..((....))(((((((.....))))))).. ( -27.40, z-score = -2.05, R) >droEre2.scaffold_4770 10028972 105 - 17746568 GACUCCAUUUGGAUUUCGAAACGAACCAGGUUUCUU---AUGAAACCGUCGAAUGUUCGAGAAGUCAGCACAAUUUCGUGAUUUACCUCCAUUUAAUAUGAGUGGAAA ((((((....)))(((((((.(((....((((((..---..)))))).)))....))))))).)))..(((......))).......(((((((.....))))))).. ( -30.10, z-score = -2.75, R) >droYak2.chr3R 2514559 105 + 28832112 GACUCCAUAUGGAUUUCGAAACAAACCUGGUUUUUU---AUGAAGCCGUCGAAUGUUCGAGAAAUCAAUACGAUUUCUUGAUUUACCUCCAUUAAAUGUGAAAGGAAA ...((((((((((.(((((........(((((((..---..))))))))))))...((((((((((.....))))))))))......)))))...))).))....... ( -24.80, z-score = -1.98, R) >droSec1.super_12 1874755 108 - 2123299 GACUCCAUUUGCAUUUCGAAACAAACCUGGUUUUUUUUUAUGAAGCCAGCGAAUGUUCGAGAAGUCAAUUGAAUAUCGUGAUUUACCGCCAUUCAAUAUGAAUGGAAA ...(((((((((.(((((((.((..(((((((((.......)))))))).)..))))))))).))..(((((((...(((......))).)))))))..))))))).. ( -29.70, z-score = -3.32, R) >droSim1.chr3R 19949326 106 - 27517382 GACUCCAUUUGCAUUUCGAAACAAACCUGGUUUUUUU--AUGAAGCCAUCGAAUGUUCGAGAAGUCAAUUGAAUUUCGUGAUUUACCGCCAUUCAAUAUGAAUGCAAA .......(((((((((((((.......(((((((...--..))))))).......)))))))..((((((((((...(((......))).))))))).))).)))))) ( -25.54, z-score = -2.39, R) >consensus GACUCCAUUUGCAUUUCGAAACAAACCUGGUUUUUUU__AUGAAGCCGUCGAAUGUUCGAGAAGUCAAUUGAAUUUCGUGAUUUACCUCCAUUCAAUAUGAAUGGAAA ((((.........(((((((.......(((((((.......))))))).......))))))))))).....................(((((((.....))))))).. (-18.12 = -18.76 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:24:25 2011