| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,915,574 – 13,915,646 |
| Length | 72 |
| Max. P | 0.561712 |
| Location | 13,915,574 – 13,915,646 |
|---|---|
| Length | 72 |
| Sequences | 3 |
| Columns | 72 |
| Reading direction | reverse |
| Mean pairwise identity | 85.38 |
| Shannon entropy | 0.20057 |
| G+C content | 0.31359 |
| Mean single sequence MFE | -7.63 |
| Consensus MFE | -7.01 |
| Energy contribution | -6.57 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.18 |
| Mean z-score | -0.97 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.561712 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13915574 72 - 27905053 CAAACAGACAUACAUAUGUACAUACAUAUUUUAGCCAGGAUUUUUACGGAUGCAGUAAACUUUAAGGGUUUU .............((((((....))))))...((((..((..(((((.......)))))..))...)))).. ( -9.50, z-score = -1.25, R) >droSim1.chr3R 19947060 64 + 27517382 --------CAAACAGACAUACAUACAUAUUUUAACCAGGAUUUUUACGGAUGCAGUAAACUUUAAGGGUUUU --------........................((((..((..(((((.......)))))..))...)))).. ( -6.90, z-score = -1.15, R) >droEre2.scaffold_4770 10026868 68 + 17746568 ----CAAACAAACAUACAUACAUACAUAUUUUAACCAGGAUUUUUACGGAUGCAGUGAACUUUUAGGGUUUU ----..............................((..((..(((((.......)))))..))..))..... ( -6.50, z-score = -0.49, R) >consensus ____CA_ACAAACAUACAUACAUACAUAUUUUAACCAGGAUUUUUACGGAUGCAGUAAACUUUAAGGGUUUU ................................((((..((..(((((.......)))))..))...)))).. ( -7.01 = -6.57 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:24:24 2011