Locus 10456

Sequence ID	dm3.chr3R
Location	13,892,644 – 13,892,761
Length	117
Max. P	0.703226

overview

Window 1

Location	13,892,644 – 13,892,761
Length	117
Sequences	12
Columns	119
Reading direction	reverse
Mean pairwise identity	94.58
Shannon entropy	0.11970
G+C content	0.40836
Mean single sequence MFE	-29.86
Consensus MFE	-27.42
Energy contribution	-27.83
Covariance contribution	0.42
Combinations/Pair	1.03
Mean z-score	-1.37
Structure conservation index	0.92
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.46
SVM RNA-class probability	0.703226
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 13892644 117 - 27905053
CUGCUUGUUGAGCCAAUGAGUAUUCAAAUGGACACUUGUCAAGCCAUGCAUGCGGCUACUAAAUCAUAUUAAGACCAGACAAGGAUUUCCAGACU-GAAAUUGGUGUAACAUGUAAGC-
.(((.(((((.((((((.....((((..((((..((((((.((((........))))......((.......))...))))))....))))...)-))))))))).))))).)))...- ( -30.70, z-score =  -1.47, R)
>droPer1.super_6 4276291 118 - 6141320
CUGCUUGUUGAGCCAAUGAGUAUUCAAAUGGACACUUGUCAAGCCCUGCAUGCGGCUACUAAAUCAUAUUAAGACCAAACAAGGAUUUCCCGAAUAAAAAUUGGGGUAACAUGGAAGC-
..((((((((..(((((...(((((..((((((....))).(((((.....).)))).......)))...............((.....)))))))...)))))..)))))....)))- ( -25.20, z-score =   0.09, R)
>dp4.chr2 28951703 118 - 30794189
CUGCUUGUUGAGCCAAUGAGUAUUCAAAUGGACACUUGUCAAGCCAUGCAUGCGGCUACUAAAUCAUAUUAAGACCAGACAAGGAUUUCCAGACUAAAAAUUGGUGUAACAUGUAAGC-
.(((.(((((.((((((.(((.......((((..((((((.((((........))))......((.......))...))))))....)))).)))....)))))).))))).)))...- ( -30.20, z-score =  -1.62, R)
>droAna3.scaffold_13340 11868083 117 + 23697760
CUGCUUGUUGAGCCAAUGAGUAUUCAAAUGGACACUUGUCAAGCCAUGCAUGCGGCUACUAAAUCAUAUUAAGACCAGACAAGGAUUUCCAGACU-GAAAUUGGUGUAACAUGUAAGC-
.(((.(((((.((((((.....((((..((((..((((((.((((........))))......((.......))...))))))....))))...)-))))))))).))))).)))...- ( -30.70, z-score =  -1.47, R)
>droSim1.chr3R 19918625 117 + 27517382
CUGCUUGUUGAGCCAAUGAGUAUUCAAAUGGACACUUGUCAAGCCAUGCAUGCGGCUACUAAAUCAUAUUAAGACCAGACAAGGAUUUCCAGACU-GAAAUUGGUGUAACAUGUAAGC-
.(((.(((((.((((((.....((((..((((..((((((.((((........))))......((.......))...))))))....))))...)-))))))))).))))).)))...- ( -30.70, z-score =  -1.47, R)
>droSec1.super_12 1849989 117 + 2123299
CUGCUUGUUGAGCCAAUGAGUAUUCAAAUGGACACUUGUCAAGCCAUGCAUGCGGCUACUAAAUCAUAUUAAGACCAGACAAGGAUUUCCAGACU-GAAAUUGGUGUAACAUGUAAGC-
.(((.(((((.((((((.....((((..((((..((((((.((((........))))......((.......))...))))))....))))...)-))))))))).))))).)))...- ( -30.70, z-score =  -1.47, R)
>droEre2.scaffold_4770 10003758 117 + 17746568
CUGCUUGUUGAGCCAAUGAGUAUUCAAAUGGACACUUGUCAAGCCAUGCAUGCGGCUACUAAAUCAUAUUAAGACCAGACAAGGAUUUCCAGACU-GAAAUUGGUGUAACAUGUAAGC-
.(((.(((((.((((((.....((((..((((..((((((.((((........))))......((.......))...))))))....))))...)-))))))))).))))).)))...- ( -30.70, z-score =  -1.47, R)
>droYak2.chr3R 2486379 117 - 28832112
CUGCUUGUUGAGCCAAUGAGUAUUCAAAUGGACACUUGUCAAGCCAAGCAUGCGGCUACUAAAUCAUAUUAAGACCAGACAAGGAUUUCCAGACU-GAAAUUGGUGUAACAUGUAAGC-
.(((.(((((.((((((.....((((..((((..((((((.((((........))))......((.......))...))))))....))))...)-))))))))).))))).)))...- ( -30.70, z-score =  -1.61, R)
>droWil1.scaffold_181089 7559906 116 + 12369635
CUGCUUGUUGAGCCAAUGAGUAUUCAAAUGGACACUUGUCAAGCCAUGCAAGCGGCUACUAAAUCAUAUUAAGACUAGACAAGGAUUUCCAGACU-GAAAUUGGUGUAACAUGUAAC--
.(((.(((((.((((((.....((((..((((..((((((.((((........))))......((.......))...))))))....))))...)-))))))))).))))).)))..-- ( -30.70, z-score =  -2.01, R)
>droVir3.scaffold_13047 12436439 118 + 19223366
UCGCUUGUUGAGCCAAUGAGUAUUCAAAUGGACACUUGUCAAGCCAUGCAAGCGGCUACUAAAUCAUAUUAAGACUAGACAAGGAUUUCCAGACUAAAAAUUGGUGUAACAUGUGCCU-
.(((.(((((.((((((.(((.......((((..((((((.((((........))))......((.......))...))))))....)))).)))....)))))).))))).)))...- ( -30.70, z-score =  -1.83, R)
>droMoj3.scaffold_6540 31507916 119 + 34148556
UCGCUUGUUGAGCCAAUGAGUAUUCAAAUGGACACUUGUCAAGCCAUGCAAGCGGCCACUAAAUCAUAUUAAGACUAGACAAGGAUUUCCAGACUCAAAAUUGGUGUAACAUGUGGACG
((((.(((((.((((((((((.......((((..((((((..(((........))).......((.......))...))))))....)))).)))))...))))).))))).))))... ( -32.10, z-score =  -1.91, R)
>droGri2.scaffold_14830 3605120 117 + 6267026
UCGCUUGUUGAGCCAAUGAGUAUUCAAAUGGACACUUGUCAAGCCAUGCAAGCGGCUACUAAAUCAUAUUAAGACUAGACCAGGAUUUCCAGACU-AAAAUUGGUGUAACAUGUCCCA-
..((.(((((.((((((.(((.......((((..((.(((.((((........))))......((.......))...))).))....)))).)))-...)))))).))))).))....- ( -25.20, z-score =  -0.23, R)
>consensus
CUGCUUGUUGAGCCAAUGAGUAUUCAAAUGGACACUUGUCAAGCCAUGCAUGCGGCUACUAAAUCAUAUUAAGACCAGACAAGGAUUUCCAGACU_GAAAUUGGUGUAACAUGUAAGC_
.(((.(((((.((((((.(((.......((((..((((((.((((........))))......((.......))...))))))....)))).)))....)))))).))))).))).... (-27.42 = -27.83 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:24:19 2011