| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,892,490 – 13,892,587 |
| Length | 97 |
| Max. P | 0.571424 |
| Location | 13,892,490 – 13,892,587 |
|---|---|
| Length | 97 |
| Sequences | 7 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 71.17 |
| Shannon entropy | 0.57769 |
| G+C content | 0.54892 |
| Mean single sequence MFE | -25.44 |
| Consensus MFE | -12.47 |
| Energy contribution | -12.94 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.571424 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13892490 97 + 27905053 CUGGUGUCGCCUUGCGUGUCAACUGAACAUCAUGCGUAGCGCAGAGUCUCCCCCUUUUUU--GGCGGAUUCUCCCC----CCACCACAACAGUAAAUGAGUAG--- .(((((.(((..((((((............))))))..)))..(((..(((.((......--)).)))..)))...----.))))).................--- ( -25.90, z-score = -1.48, R) >droAna3.scaffold_13340 11867961 79 - 23697760 CUCCUGUCGCCUUGCGUGUCAAGUGAACAUCAUGCGUAGCGCAGUUUCUCCCCUUCGGAGCUGUAUGAAUCCCCCCUUG--------------------------- ........((..((((((....(....)..))))))..))((((((((........))))))))...............--------------------------- ( -18.70, z-score = -1.86, R) >droSim1.chr3R 19918482 100 - 27517382 CUGGUGUCGCCUUGCGUGUCAACUGAACAUCAUGCGUAGCGCAGAGUCUCCCCCUUUUU---GGCGGAUUCUCCCCACCACCACCGCAACAGUAAAUGAGUAG--- .(((((.(((..((((((............))))))..)))..(((..(((.((.....---)).)))..)))..))))).......................--- ( -25.70, z-score = -0.75, R) >droSec1.super_12 1849846 100 - 2123299 CUGGUGUCGCCUUGCGUGUCAACUGAACAUCAUGCGUAGCGCAGAGUCUCCCCCUUUUU---GGCGGAUUCUCCCCACCACCACCGCAACAGUAAAUGAGUAG--- .(((((.(((..((((((............))))))..)))..(((..(((.((.....---)).)))..)))..))))).......................--- ( -25.70, z-score = -0.75, R) >droEre2.scaffold_4770 10003628 92 - 17746568 CCGGUGUCGCCUUGCGUGUCAACUGAACAUCAUGCGUAGCGCAGAGUCUCCCCUUUU-----GGCGGAUUCUCCCC------ACCAAAAAAGUAAGCGAGUAG--- ..((((.(((..((((((............))))))..)))..(((..(((((....-----)).)))..)))..)------)))..................--- ( -25.50, z-score = -1.42, R) >droYak2.chr3R 2486235 92 + 28832112 CUGGUGUCGCCUUGCGUGUCAACUGAACAUCAUGCGUAGCGCAGAGUCUCUCCUUUU-----GGCUGAUUCUCCCC------ACCAAAAAAGUAAGCGCGUAG--- .(((((.(((..((((((............))))))..))).((((((...((....-----))..))))))...)------)))).................--- ( -23.30, z-score = -0.74, R) >droMoj3.scaffold_6540 31507775 101 - 34148556 CCGUCGCCACGUUGCGUGUCAAGUGAACAUCAUGCGUAGCGCAGU-UUUCACUGGCGACUCGGCUCGGCUCGCAGCAG----AAGCGAAGACUUCCUCGUUAGCCU ..((((((.((((((((((...(....)...)))))))))).(((-....)))))))))..(((((.((.....)).)----)(((((.(....).))))).))). ( -33.30, z-score = -0.03, R) >consensus CUGGUGUCGCCUUGCGUGUCAACUGAACAUCAUGCGUAGCGCAGAGUCUCCCCCUUUUU___GGCGGAUUCUCCCC______ACCACAACAGUAAAUGAGUAG___ ....((.(((..((((((............))))))..)))))(((((..((..........))..)))))................................... (-12.47 = -12.94 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:24:18 2011