| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,877,411 – 13,877,519 |
| Length | 108 |
| Max. P | 0.696181 |
| Location | 13,877,411 – 13,877,519 |
|---|---|
| Length | 108 |
| Sequences | 7 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 78.96 |
| Shannon entropy | 0.40618 |
| G+C content | 0.45803 |
| Mean single sequence MFE | -30.10 |
| Consensus MFE | -13.43 |
| Energy contribution | -15.27 |
| Covariance contribution | 1.84 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.696181 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13877411 108 - 27905053 UAUCGGGUAUCUGUUUUGUCGGUCGGUUAGCUUUACGAUGCCAUCUUCUAGGUGAUUCG------GCUUCUGUUUUGUUGCCUUUGGCAAUCACUCAAUUUGCUGGCCGACAAC ...............((((((((((((.........(((((((......(((..((..(------((....)))..))..))).)))).))).........)))))))))))). ( -34.47, z-score = -3.19, R) >droAna3.scaffold_13340 11854320 99 + 23697760 CAUCUGGUAUCUGUUGUGUCGAUCGGGAAGCUUUACGAUGCCAUCUUCUCUCAGCUACU------GUAUCUGCUUCGAUGCCUUUGGCAGUCACUCAAUUUUCUC--------- ....(((((((((..((.((......)).))..)).)))))))..........((((..------(((((......)))))...)))).................--------- ( -19.60, z-score = 0.28, R) >droEre2.scaffold_4770 9989922 108 + 17746568 UAUCGGAUAUCUGUUUUGUCGGUCGGGAAGCUUUACGAUGCCAUCUUCUCGGUGUUUCG------GCUUCUGUUUUGUUGCCUUUGGCAAUCACUCAAUUUGCUGGCCGACAAC ...(((....)))..(((((((((((((((((....((((((........))))))..)------)))))((....((((((...))))))....)).....))))))))))). ( -36.00, z-score = -3.53, R) >droYak2.chr3R 2471522 108 - 28832112 UAUCGGGUAUUUGUUUUGUCGGUCGGGAAGCUUUACGAUGCCAUCUUCUCGGUGUUUCA------GCUUCUGUUUUGUUGCCUUUGGCAAUCACUCAAUUUGCUGGUCGACAAC ...............((((((..(((((((((....((((((........))))))..)------)))))((....((((((...))))))....)).....)))..)))))). ( -32.10, z-score = -2.66, R) >droSec1.super_12 1836233 108 + 2123299 UAUCGGGUAUCUGUUUUGUCGGUCGGUUAGCUUUACGAUGCCAUCUUCUCGGUGAUUCG------GCUUUUGUUUUGUUGCCUUUGGCAAUCACUCAAUUUGCUGGCCGACAAC ...............((((((((((((.........(((((((.......((..((..(------((....)))..))..))..)))).))).........)))))))))))). ( -32.17, z-score = -2.53, R) >droSim1.chr3R 19904427 108 + 27517382 UAUCGGGUAUCUGUUUUGUCGGUCGGUUAGCUUUACGAUGCCAUCUUCUCGGUGAUUCG------GCUUCUGUUUUGUUGCCUUUGGCAAUCACUCAAUUUGCUGGCCGACAAC ...............((((((((((((.........(((((((.......((..((..(------((....)))..))..))..)))).))).........)))))))))))). ( -32.17, z-score = -2.46, R) >droWil1.scaffold_181089 7548009 103 + 12369635 ---GAUCUAUCUGUUGGCAUGGAAAGGAAGCUUUCUGCUCUUCUUUUCUGUCGUGUACAAUGUGCGCUUCUGUUUUGUUGCUUUUGGCAGUCACUCAAUUUGUUGU-------- ---((.....(((((((((.(((((((((((.....))).))))))))))))((((((...))))))..................)))))....))..........-------- ( -24.20, z-score = -1.09, R) >consensus UAUCGGGUAUCUGUUUUGUCGGUCGGGAAGCUUUACGAUGCCAUCUUCUCGGUGAUUCG______GCUUCUGUUUUGUUGCCUUUGGCAAUCACUCAAUUUGCUGGCCGACAAC ...............(((((((((((...((........)).............................((....((((((...))))))....)).....))))))))))). (-13.43 = -15.27 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:24:16 2011