| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,857,434 – 13,857,567 |
| Length | 133 |
| Max. P | 0.553674 |
| Location | 13,857,434 – 13,857,567 |
|---|---|
| Length | 133 |
| Sequences | 5 |
| Columns | 133 |
| Reading direction | forward |
| Mean pairwise identity | 91.00 |
| Shannon entropy | 0.15669 |
| G+C content | 0.30169 |
| Mean single sequence MFE | -28.40 |
| Consensus MFE | -21.84 |
| Energy contribution | -23.60 |
| Covariance contribution | 1.76 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.553674 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13857434 133 + 27905053 GUAAACAAUAGCUACCAUUUGUUAUUAUUAUUUGUGAGUGAUUCCUCUCAUUGAAGCAUCUUCUUGUUUAUAAUCUAAAGAAGAAUAAAUAGGUUUAUUGUUUUUUGUGAUAAUUGGUUUAACAGCUGCUGGU .....((.(((((((((.(((((((........(((((.(....).))))).((((((....(((((((((..(((.....)))))))))))).....))))))..))))))).)))).....))))).)).. ( -28.30, z-score = -1.64, R) >droSim1.chr3R 19889259 130 - 27517382 GUAAACAAUAGCAACCAUUUGUUAUUAUU---UGUGAGUGAUUCCUCUCAUUGAAGCAUCUUCUUGUUUAUAAUCUAAAGAAGAAUAAACAGGUUUAUUGUUUUUUGUGAUAAUUGGUUUAACAGCUGUUGGU .....((((((((((((.(((((((....---.(((((.(....).))))).((((((....(((((((((..(((.....)))))))))))).....))))))..))))))).))))).....))))))).. ( -33.50, z-score = -3.38, R) >droSec1.super_12 1823560 130 - 2123299 GUAAACAAUUGCUACCAUUUGUUAUUAUU---UGUGAGUGAUUCCUCUCAUUGAAGCAUCUUCUUGUUUAUAAUCUAAAGAAUAAUAAGCAGGUUUAUUGUUUUUUGUGAUAAUUAGUUUAACAGCUGCUGGU ..........((((.((.((((((.....---.(((((.(....).)))))..(((((......)))))...(((((((((((((((((....)))))))))))))).)))........)))))).)).)))) ( -24.40, z-score = -0.47, R) >droYak2.chr3R 2453174 128 + 28832112 GUAAACAAUAGCUCACAUUUGUUAAUAUU---UGUGAGUGAUCCCUCUCAUUGAAGCAUCUUCUUGUUUAUAAUCUAA-AAAGAAUAAACAGGUUUAUUGUUUUUC-CGAUAAUCGUAUUAACAGCUGCCGGU ..........(((..((.((((((((((.---.(((((.(....).))))).((((((....(((((((((..(((..-..)))))))))))).....))))))..-........)))))))))).))..))) ( -25.80, z-score = -1.93, R) >droEre2.scaffold_4770 9977303 129 - 17746568 GUAAACAAUAGCUACCAUUUGUUAUUAUU---UGUGAGUGAUGCCUCUCAUAGAAGCAUCUUCUUGUUUAUAAUCUAAGAAAGAAUAAACAGGUUUAUUGUUUUUC-UGAUAAUUGGAUUAACAGCUGUCGGG ..(((((((((..(((.............---...(((.(((((.((.....)).)))))))).(((((((..(((.....))))))))))))))))))))))..(-(((((.(((......))).)))))). ( -30.00, z-score = -1.94, R) >consensus GUAAACAAUAGCUACCAUUUGUUAUUAUU___UGUGAGUGAUUCCUCUCAUUGAAGCAUCUUCUUGUUUAUAAUCUAAAGAAGAAUAAACAGGUUUAUUGUUUUUUGUGAUAAUUGGUUUAACAGCUGCUGGU .....((.(((((((((.(((((((........(((((.(....).))))).((((((....(((((((((..(((.....)))))))))))).....))))))..))))))).)))).....))))).)).. (-21.84 = -23.60 + 1.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:24:13 2011