| Sequence ID | dm3.chr2L |
|---|---|
| Location | 7,851,585 – 7,851,671 |
| Length | 86 |
| Max. P | 0.622666 |
| Location | 7,851,585 – 7,851,671 |
|---|---|
| Length | 86 |
| Sequences | 4 |
| Columns | 86 |
| Reading direction | forward |
| Mean pairwise identity | 84.69 |
| Shannon entropy | 0.25185 |
| G+C content | 0.67811 |
| Mean single sequence MFE | -33.68 |
| Consensus MFE | -24.69 |
| Energy contribution | -26.12 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.622666 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7851585 86 + 23011544 CCACUGGCACUGCCACUCCCACUACCACCGCCCAGUUCUCCCAACACCGUUUGGGCCUGGCCGGUGGCGGGAUAUCCCAUGGCCAG ...(((((................((((((.((((....(((((......))))).)))).)))))).(((....)))...))))) ( -36.00, z-score = -2.59, R) >droSim1.chr2L 7649662 86 + 22036055 CCACUGGCACUGCCACUCCCACUGCCACCGCCCAGCUCCCCCAACACCGUUUGGGUCUGGCCGGUGGCGGGAUAUCCCAUGGCCAG ...(((((...............(((((((.((((....(((((......))))).)))).)))))))(((....)))...))))) ( -40.20, z-score = -3.22, R) >droSec1.super_3 3365952 86 + 7220098 CCACUGGCACUGCCACUCCCACUGACACCGCCCAGCUCCCCCAACACCGUUUGGGUCUGGCCGGUGGCGGGAUAUCCCAUGGCCAG ...(((((.................(((((.((((....(((((......))))).)))).)))))..(((....)))...))))) ( -33.60, z-score = -1.33, R) >droAna3.scaffold_12943 3586521 74 - 5039921 ------------CCACUCCCACUGCUGGCGCCCACCUCGCCGAGCACCGUUUGGGACUGCCCGGUGGCAGGAUAUCCCAUGGCCAG ------------......(((.((((((((.......)))).)))).....((((((((((....)))))....)))))))).... ( -24.90, z-score = 0.24, R) >consensus CCACUGGCACUGCCACUCCCACUGCCACCGCCCAGCUCCCCCAACACCGUUUGGGUCUGGCCGGUGGCGGGAUAUCCCAUGGCCAG ...........((((........(((((((.((((....(((((......))))).)))).)))))))(((....))).))))... (-24.69 = -26.12 + 1.44)
| Location | 7,851,585 – 7,851,671 |
|---|---|
| Length | 86 |
| Sequences | 4 |
| Columns | 86 |
| Reading direction | reverse |
| Mean pairwise identity | 84.69 |
| Shannon entropy | 0.25185 |
| G+C content | 0.67811 |
| Mean single sequence MFE | -40.10 |
| Consensus MFE | -30.75 |
| Energy contribution | -32.62 |
| Covariance contribution | 1.88 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.562540 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 7851585 86 - 23011544 CUGGCCAUGGGAUAUCCCGCCACCGGCCAGGCCCAAACGGUGUUGGGAGAACUGGGCGGUGGUAGUGGGAGUGGCAGUGCCAGUGG (((((.((......(((((((((((.((((.(((((......)))))....)))).)))))))...))))......)))))))... ( -43.40, z-score = -2.43, R) >droSim1.chr2L 7649662 86 - 22036055 CUGGCCAUGGGAUAUCCCGCCACCGGCCAGACCCAAACGGUGUUGGGGGAGCUGGGCGGUGGCAGUGGGAGUGGCAGUGCCAGUGG ((((((..(((....)))(((((((.((((.(((((......)))))....)))).))))))).............).)))))... ( -44.80, z-score = -2.23, R) >droSec1.super_3 3365952 86 - 7220098 CUGGCCAUGGGAUAUCCCGCCACCGGCCAGACCCAAACGGUGUUGGGGGAGCUGGGCGGUGUCAGUGGGAGUGGCAGUGCCAGUGG (((((.((......(((((((((((.((((.(((((......)))))....)))).)))))...))))))......)))))))... ( -42.00, z-score = -1.64, R) >droAna3.scaffold_12943 3586521 74 + 5039921 CUGGCCAUGGGAUAUCCUGCCACCGGGCAGUCCCAAACGGUGCUCGGCGAGGUGGGCGCCAGCAGUGGGAGUGG------------ ....((((((((....(((((....)))))))))...((.((((.((((.......)))))))).))...))))------------ ( -30.20, z-score = 0.30, R) >consensus CUGGCCAUGGGAUAUCCCGCCACCGGCCAGACCCAAACGGUGUUGGGGGAGCUGGGCGGUGGCAGUGGGAGUGGCAGUGCCAGUGG ...((((((((....)))(((((((.((((.(((((......)))))....)))).))))))).......)))))........... (-30.75 = -32.62 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:24:31 2011