| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,854,634 – 13,854,729 |
| Length | 95 |
| Max. P | 0.765719 |
| Location | 13,854,634 – 13,854,729 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 74.49 |
| Shannon entropy | 0.43236 |
| G+C content | 0.50040 |
| Mean single sequence MFE | -20.55 |
| Consensus MFE | -12.46 |
| Energy contribution | -12.68 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.765719 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13854634 95 - 27905053 UGGCCAGAUCUUUGGCCAAAUUAUGUCGUUAUUUGUGCCAUUUUUGGCAAACGCCUCCACCGCCGACUUCCU-----UUACCGCCACUGACGACGAUCGU (((((((....))))))).....((((((((....(((((....)))))..((.(......).)).......-----..........))))))))..... ( -25.40, z-score = -2.18, R) >droSim1.chr3R 19886567 93 + 27517382 UGGCCAGAUCUGUGGCCAAAUUAUGUCGUUAUUUGUGCCAUUUUUGGCAAACGCCUCCACCUUCGACUCCAC-----ACACCGCCACUGACGACGAUC-- ((((((......)))))).....((((((((....(((((....)))))..((..........)).......-----..........))))))))...-- ( -23.30, z-score = -1.59, R) >droSec1.super_12 1820896 93 + 2123299 UGGCCAGAUCUGUGGCCAAAUUAUGUCGUUAUUUGUGCCAUUUUUGGCAAACGCCUCCACCUUCGACUCCAC-----ACACCGCCACUGACGACGAUC-- ((((((......)))))).....((((((((....(((((....)))))..((..........)).......-----..........))))))))...-- ( -23.30, z-score = -1.59, R) >droYak2.chr3R 2450335 98 - 28832112 UGGCCAGAUCUGUGGCCAAAUUAUGUCGUUAUUUGUGCCAUUUUUGGCAAACGCCUCCACCUCUAACUCCACCACCGCCAUCGCCACUGACGACGAUC-- ((((((......)))))).....((((((((....(((((....)))))...........................((....))...))))))))...-- ( -25.10, z-score = -2.18, R) >dp4.chr2 28909961 72 - 30794189 UGGCCAAAUCUUCAG-CAAAUUAUGUCGUUAUUUGUGCCAUUUUUGGCAAACGCCUCCUCUGCCCCACCGAUG--------------------------- (((((((((...(.(-((.....))).)..))))).)))).....(((....)))..................--------------------------- ( -13.10, z-score = -0.68, R) >droPer1.super_6 4236617 72 - 6141320 UGGCCAAAUCUUCAG-CAAAUUAUGUCGUUAUUUGUGCCAUUUUUGGCAAACGCCUCCUCUGCCCCACCGAUG--------------------------- (((((((((...(.(-((.....))).)..))))).)))).....(((....)))..................--------------------------- ( -13.10, z-score = -0.68, R) >consensus UGGCCAGAUCUGUGGCCAAAUUAUGUCGUUAUUUGUGCCAUUUUUGGCAAACGCCUCCACCGCCGACUCCAC______CACCGCCACUGACGACGAUC__ (((((((((...((((........))))..))))).)))).....(((....)))............................................. (-12.46 = -12.68 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:24:11 2011