| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,828,576 – 13,828,688 |
| Length | 112 |
| Max. P | 0.531406 |
| Location | 13,828,576 – 13,828,688 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 75.83 |
| Shannon entropy | 0.47726 |
| G+C content | 0.43433 |
| Mean single sequence MFE | -22.54 |
| Consensus MFE | -13.39 |
| Energy contribution | -14.62 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.05 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.531406 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13828576 112 + 27905053 ACAUAAAGCAUACUUUAUUAACGCUACUUUUUCCGGCUUACUGGCAACAAUCGCUGUUGCAGAACACUUGAAGAUUUUCCACGGAUGCUGCUUUUGUUGCCACCAAAGCAAU ..((((((....)))))).................((((..(((((((((..((....(((........(((....)))......))).))..)))))))))...))))... ( -23.14, z-score = -0.78, R) >droSim1.chr3R 19857660 112 - 27517382 ACAUAAAACGUACUUUAUUAACACUACUUUUUCCGGCUUACUGGCAACAAUCGCUGUUGCAGCACACUUGAAGAUUUUCCACGGAUGCUGCUUUUGUUGCCACCAAAGCAAU ...................................((((..(((((((((........((((((..(.((.........)).)..))))))..)))))))))...))))... ( -25.90, z-score = -2.15, R) >droSec1.super_12 1795356 112 - 2123299 GCAUAAAACAUACUUUAUUAACACUACUUUUUCCGGCUUACUGGCAACAAUCGCUGUUGCAGCACACUUGAAGAUUUUCCACGGAUGCUGCUUUUGUUGCCACCAAAGCAAU ...................................((((..(((((((((........((((((..(.((.........)).)..))))))..)))))))))...))))... ( -25.90, z-score = -2.19, R) >droYak2.chr3R 2421263 110 + 28832112 AUAUGAAGCAUACUUUAUCAACGCUACUUUUUCCGGCUUACUGGCAACAAUCGCUGCUGCAG--CACUUGAAGAUUUUCCACGGAUGCUGCUUUUGUUGCCACCAAAGCAAU ..((((((....)))))).................((((..(((((((((........((((--((..((..(.....)..))..))))))..)))))))))...))))... ( -26.90, z-score = -1.26, R) >droEre2.scaffold_4770 9949051 112 - 17746568 ACACCAAGUAUCCUUUAUUAACGCUACUUUUUCCGGCUUACUGGUAACAAUCGCUGCUGCAGCACACUUGAAGAUUUUCCACGGAUGCUGCUUUUGUUGCCACCAAAGCAAU .....(((((.(.((....)).).)))))......((((..(((((((((........((((((..(.((.........)).)..))))))..)))))))))...))))... ( -24.20, z-score = -0.97, R) >droWil1.scaffold_181089 7508358 90 - 12369635 ----------UGUUCUGUUG-CGGCACACUUAAAGAUUUGUUAGCUGCUUUUGCCAUUUCCCCCCCCCC------CCUCCAAAACUACCGCAUCUAGC----CCAAAGCAA- ----------((((.((..(-((((..((..........))..))))).....................------..............((.....))----.)).)))).- ( -9.20, z-score = 1.03, R) >consensus ACAUAAAGCAUACUUUAUUAACGCUACUUUUUCCGGCUUACUGGCAACAAUCGCUGUUGCAGCACACUUGAAGAUUUUCCACGGAUGCUGCUUUUGUUGCCACCAAAGCAAU ...................................((((..(((((((((..((.((.............................)).))..)))))))))...))))... (-13.39 = -14.62 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:24:07 2011