| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,823,383 – 13,823,436 |
| Length | 53 |
| Max. P | 0.983229 |
| Location | 13,823,383 – 13,823,436 |
|---|---|
| Length | 53 |
| Sequences | 5 |
| Columns | 53 |
| Reading direction | reverse |
| Mean pairwise identity | 90.94 |
| Shannon entropy | 0.15923 |
| G+C content | 0.57736 |
| Mean single sequence MFE | -19.04 |
| Consensus MFE | -19.60 |
| Energy contribution | -19.04 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.71 |
| Structure conservation index | 1.03 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.13 |
| SVM RNA-class probability | 0.983229 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13823383 53 - 27905053 UGGCAAACACUUCAGCUGGCACUUGUUGGAAGAGGACGGCGAUAGCCAGCGCU ..............((((((..((((((........))))))..))))))... ( -17.80, z-score = -1.49, R) >droSim1.chr3R 19852021 53 + 27517382 UGGCAAACACUUCAGCUGGCACUUGUUGGAAGAGCACAGCGAUAGCCAGCGCU ..............((((((..((((((........))))))..))))))... ( -18.60, z-score = -1.62, R) >droSec1.super_12 1790287 53 + 2123299 UGGCAAACACUUCAGCUGGCACUUGUUGGAAGAGCACAGCGAUAGCCAGCGCU ..............((((((..((((((........))))))..))))))... ( -18.60, z-score = -1.62, R) >droEre2.scaffold_4770 9941597 53 + 17746568 UGGCAAACACUUCAGCUGGCACUUGUUGGAAGAGGACGGCGAUAGCCAGCGCU ..............((((((..((((((........))))))..))))))... ( -17.80, z-score = -1.49, R) >droAna3.scaffold_13340 11805435 53 + 23697760 ACUCGGACACUUCAGCUGGCACUCGCUGGAGGGGGACGGCGAUAGCCAGCGCU ..............((((((..((((((........))))))..))))))... ( -22.40, z-score = -2.34, R) >consensus UGGCAAACACUUCAGCUGGCACUUGUUGGAAGAGGACGGCGAUAGCCAGCGCU ..............((((((..((((((........))))))..))))))... (-19.60 = -19.04 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:24:06 2011