| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,817,116 – 13,817,218 |
| Length | 102 |
| Max. P | 0.765266 |
| Location | 13,817,116 – 13,817,218 |
|---|---|
| Length | 102 |
| Sequences | 11 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 72.18 |
| Shannon entropy | 0.55289 |
| G+C content | 0.45324 |
| Mean single sequence MFE | -23.96 |
| Consensus MFE | -12.98 |
| Energy contribution | -13.25 |
| Covariance contribution | 0.27 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.765266 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13817116 102 + 27905053 UAGGUAAAUACGAAUAUGAGAACA-GGCC--GCUGGAGUCUGACACUGAAGUUGAUGGGUUAAUGCCAUUAGACGGCA------UUGAUUUGAUUGGCGUUGAUUGGGAAA ..........(.(((.......((-((((--....).)))))........((..(((((((((((((.......))))------))))))).))..))....))).).... ( -22.80, z-score = -0.72, R) >droPer1.super_6 4184430 93 + 6141320 ----------UGACUCCC--AGCCCAAUCCUCUCACACUGAAAGUUCUCUGCUGAUGGGUUAAUGCCAUUAGACGGCA------UUGAUUUGAUUGGCGUUGAUUGGGAAA ----------........--..(((((((((.((.....)).))......((..(((((((((((((.......))))------))))))).))..))...)))))))... ( -28.50, z-score = -1.89, R) >dp4.chr2 28857477 95 + 30794189 ----------CGACUCCCCCGGCCCAAUCCUCUCGCACUGAAAGUUCUCUGCUGAUGGGUUAAUGCCAUUAGACGGCA------UUGAUUUGAUUGGCGUUGAUUGGGAAA ----------....((((.((((((((((((.(((((..((....))..))).)).))(((((((((.......))))------)))))..)))))).))))...)))).. ( -31.40, z-score = -2.04, R) >droAna3.scaffold_13340 11799691 89 - 23697760 ----------------UGGGAACUGGCUCCUGCCGGAGCCUGACACUGAAGUUGAUGGGUUAAUGCCAUUAGCCGGCA------UUGAUUUGAUUGGCGUUGAUUGGGAAA ----------------.(((..(((((....)))))..))).........((..(((((((((((((.......))))------))))))).))..))............. ( -29.00, z-score = -1.66, R) >droEre2.scaffold_4770 9935316 102 - 17746568 UGGGUAAAUACGAAUAUGAGAACA-GGCC--GCAGGAGUCUGACACUGAAGUUGAUGGGUUAAUGCCAUUAGACGGCA------UUGAUUUGAUUGGCGUUGAUUGGGAAA ..........(.(((.......((-((((--....).)))))........((..(((((((((((((.......))))------))))))).))..))....))).).... ( -22.80, z-score = -0.64, R) >droYak2.chr3R 2409600 102 + 28832112 UGGGUAAAUACGAAUAUGAGAACA-GGCC--GCUGGAGUCUGACACUGAAGUUGAUGGGUUAAUGCCAUUAGACGGCA------UUGAUUUGAUUGGCGUUGAUUGGGAAA ..........(.(((.......((-((((--....).)))))........((..(((((((((((((.......))))------))))))).))..))....))).).... ( -22.80, z-score = -0.61, R) >droSec1.super_12 1784133 103 - 2123299 UGGGUAAAUACGAAUAUGAGAACACGGCC--GCUGGAGUCUGACACUGAAGUUGAUGGGUUAAUGCCAUUAGACGGCA------UUGAUUUGAUUGGCGUUGAUUGGGAAA ........................((((.--((..(.(((.(((......))))))(((((((((((.......))))------)))))))..)..))))))......... ( -20.50, z-score = 0.41, R) >droSim1.chr3R 19845691 103 - 27517382 UGGGUAAAUACGAAUAUGAGAACACGGCC--GCUGGAGUCUGACACUGAAGUUGAUGGGUUAAUGCCAUUAGACGGCA------UUGAUUUGAUUGGCGUUGAUUGGGAAA ........................((((.--((..(.(((.(((......))))))(((((((((((.......))))------)))))))..)..))))))......... ( -20.50, z-score = 0.41, R) >droVir3.scaffold_13047 12356619 85 - 19223366 ----------------UGAUAGAGAAGCC--GACUGACACUGAAGUUG--GUUGAUGGGCAAAUGCCAUUAGACGGCU------UUGAUUUGAUUGGCGUUGAUUGGAAAA ----------------.......((((((--(((..((......))..--))((((((.(....)))))))..)))))------))..((..(((......)))..))... ( -22.50, z-score = -2.52, R) >droMoj3.scaffold_6540 31417655 79 - 34148556 ----------------UGAGA----------GACGGCGACUGACACUGAAGUUGAUGGGUUAAUGCCAUUAGACGGCA------UUGAUUUGAUUGGCGUUGAUUGGAAAA ----------------.((..----------((((.(((((........))))..(..(((((((((.......))))------)))))..)...).))))..))...... ( -20.50, z-score = -2.78, R) >droWil1.scaffold_181089 7496424 96 - 12369635 ---------------CAGACAAACGAAGAGCUACAAACUGUCAGUUGCAAGUUGAUGGGUUAAUGCCAUUAGACGGCAGCAGCAUUGAUUUGAUUGGCGUUGAUUGGAAAA ---------------....(((.(((...((((((((.(((..(((((...(((((((.......)))))))...))))).)))....))))..)))).))).)))..... ( -22.30, z-score = -0.34, R) >consensus __________CGAAUAUGAGAACA_GGCC__GCCGGAGUCUGACACUGAAGUUGAUGGGUUAAUGCCAUUAGACGGCA______UUGAUUUGAUUGGCGUUGAUUGGGAAA .......................................................(.(((((((((((((((((((........))).))))).))))))))))).).... (-12.98 = -13.25 + 0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:24:03 2011