| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,814,727 – 13,814,778 |
| Length | 51 |
| Max. P | 0.567502 |
| Location | 13,814,727 – 13,814,778 |
|---|---|
| Length | 51 |
| Sequences | 4 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 95.10 |
| Shannon entropy | 0.07954 |
| G+C content | 0.49510 |
| Mean single sequence MFE | -9.80 |
| Consensus MFE | -9.09 |
| Energy contribution | -8.90 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.567502 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13814727 51 + 27905053 UAAGGAUUGGGAAGGAUAUCCUCUCGAACAGGACAACAAGCAACAGCAUCG ......((((((.((....))))))))............((....)).... ( -8.60, z-score = -1.20, R) >droSim1.chr3R 19843319 51 - 27517382 UAAGGACUGGGAAGGAUAUCCUCUCGAACAGGACAACAAGCAACAGCAUCG ...(..((((..(((....)))..)...)))..).....((....)).... ( -9.70, z-score = -1.51, R) >droSec1.super_12 1781751 51 - 2123299 UAAGGACUGGGAAGGAUAUCCUCUCGAACAGGACAACAAGCAACAGCAUCG ...(..((((..(((....)))..)...)))..).....((....)).... ( -9.70, z-score = -1.51, R) >droEre2.scaffold_4770 9932909 51 - 17746568 ACUGGACUGGGAAGGAUAUCCUCUCGAACAGGACAACAAGCAACAGCGUCG .(((...(((((.((....)))))))..)))(((.....((....))))). ( -11.20, z-score = -0.76, R) >consensus UAAGGACUGGGAAGGAUAUCCUCUCGAACAGGACAACAAGCAACAGCAUCG ...(..((((..(((....)))..)...)))..).....((....)).... ( -9.09 = -8.90 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:24:02 2011