| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,808,929 – 13,809,053 |
| Length | 124 |
| Max. P | 0.739367 |
| Location | 13,808,929 – 13,809,053 |
|---|---|
| Length | 124 |
| Sequences | 5 |
| Columns | 124 |
| Reading direction | reverse |
| Mean pairwise identity | 81.66 |
| Shannon entropy | 0.33653 |
| G+C content | 0.37341 |
| Mean single sequence MFE | -33.07 |
| Consensus MFE | -23.48 |
| Energy contribution | -24.32 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.739367 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 13808929 124 - 27905053 GUUUUUAGCUUGGCUGCGGCUGCUGGCUACUUUUCACUGAAUAUUUAAGUAGUUAACGCUGGGAUAUUGUUUUUACAAUAAAUUUUGCAGUUCAGUUAGGCGCUUUUAGUAGCUGCACUUUAAA .......(((((((((.(((((((((((((((..............))))))))).........((((((....))))))......)))))))))))))))(((......)))........... ( -33.84, z-score = -1.22, R) >droSim1.chr3R 19837582 123 + 27517382 GUUUUUAGCUUGGCUGCGGCUGCUGGCUACUUUUCACUGAAUAUUUAAGUAGUUAACGCUGGUAUAUUGUUUUUACAAUAAA-UUUGCAGCUUAGUUAGGCGCUUUUACUAGCUGCAUUGGAAA .(((((((((((((((.(((((((((((((((..............))))))))).........((((((....))))))..-...)))))))))))))))(((......))).....)))))) ( -34.44, z-score = -1.27, R) >droSec1.super_12 1776013 123 + 2123299 GUUUUUAGCUUGGCUGCGGCUGCUGGCUACUUUUCACUGAAUAUUUAAGUAGUUAACGCUGGUGUAUUGUUUUUACAAUAAA-UUUGCAGCUUAGUUAGGCGCUUUUAGUAGCUGUAUUGGAAA .(((((((((((((((.(((((((((((((((..............))))))))).........((((((....))))))..-...)))))))))))))))(((......))).....)))))) ( -34.34, z-score = -0.97, R) >droYak2.chr3R 2401493 106 - 28832112 GUUUUCAUCUUGGCUGCGCCUGCUGGCUACUUUUCACGGAAUAGUCAAGUAGUUAACGCUGGUAUAUUGUUUUUACAAUAUA-UUUAUAACUUAGUAAGGCGCUUAU----------------- ...............(((((((((((((((((...((......)).))))))).......((((((((((....))))))))-)).......)))).))))))....----------------- ( -27.40, z-score = -1.96, R) >droEre2.scaffold_4770 9927334 121 + 17746568 GUUUUUAGCAUGGCUGCGGCUGCUGGCUACUUUUCACUGAAUUUUUAAGUAGUUAACGCUGGGAUAUUGUUUUUACAAUAUA-UUCACAGUUUGGUUUAGUGCAGCUGCUAGGCAUUUUCAU-- .........(((.(((((((((((((((((((..............)))))))))..((((..(((((((....))))))).-....))))..........)))))))).)).)))......-- ( -35.34, z-score = -2.46, R) >consensus GUUUUUAGCUUGGCUGCGGCUGCUGGCUACUUUUCACUGAAUAUUUAAGUAGUUAACGCUGGUAUAUUGUUUUUACAAUAAA_UUUGCAGCUUAGUUAGGCGCUUUUACUAGCUGCAUUGGAAA .......(((((((((.(((((((((((((((..............))))))))).........((((((....))))))......)))))))))))))))....................... (-23.48 = -24.32 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:24:01 2011