| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,781,108 – 13,781,210 |
| Length | 102 |
| Max. P | 0.663471 |
| Location | 13,781,108 – 13,781,210 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 121 |
| Reading direction | reverse |
| Mean pairwise identity | 79.04 |
| Shannon entropy | 0.34869 |
| G+C content | 0.36688 |
| Mean single sequence MFE | -25.92 |
| Consensus MFE | -16.86 |
| Energy contribution | -16.14 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.663471 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13781108 102 - 27905053 UUUAU-UUUAAUACCAUACCAGAAAGGUGUUACGCGCUUUUCCCCAGGGCAUAUUUUUUCC--CUAGUGAUGGCAAAACCAGUUUGGUUUAU---------UACAUUAAAAUUU------- ...((-((((((.((((..(.((((((((.....))))))))...((((.(......).))--)).)..))))..(((((.....)))))..---------...))))))))..------- ( -22.80, z-score = -1.90, R) >droEre2.scaffold_4770 9900370 115 + 17746568 UUUAC-UUUAAUACCAUACCAGAAAGGUGUUGGGCACUUUUCCCCAGGGCAUAU-UUUCCCG---AGUGAUGGC-AAACCAGUUUGGUCUAUUAAGCCUUUUACACUACAAUUUCUUGUGU .....-.........((((.((((((((((.((((...........(((.....-...))).---..((((((.-..(((.....))))))))).))))...)))))....))))).)))) ( -25.40, z-score = -0.27, R) >droYak2.chr3R 2373631 114 - 28832112 --UACAUUUAAUACCAUACAAGAAAGGUGUUUUGCACUUUUCCUCGGGGAAUAUAUUUCCCG---GGUGAUGGC-AAACCAGUUUGGU-UAUUAAGCAUUGUACACUAAAAUUGUUAAUGU --.....(((((((((.((..((((((((.....))))))))(((((((((....)))))))---))...(((.-...))))).))).-))))))((((((.(((.......))))))))) ( -33.10, z-score = -2.97, R) >droSec1.super_12 1748503 104 + 2123299 UUCAU-UUUAAUGCCAUACCAGAAAGGUGUUACGCGCUUUUCCCCAGGGCAUAUUUUUUCCGAGUGAUGAUGGCAAAACCAGUUUGGUUUAU---------UACAUUAAAAUUU------- .....-....(((((......((((((((.....)))))))).....))))).........((((..(((((...(((((.....)))))..---------..)))))..))))------- ( -23.90, z-score = -1.48, R) >droSim1.chr3R 19807403 104 + 27517382 UUUAC-UUUAAUGCCAUACCAGAAAGGUGUUACGCGCUUUUCCCCAGGGCAUAUUUUUCCCGAGUGAUGAUGGCAAAACCAGUUUGGUUUAU---------UACAUUAAAAUUU------- .....-(((((((((((..((((((((((.....))))))))....(((.(.....).)))...))...))))).(((((.....)))))..---------...))))))....------- ( -24.40, z-score = -1.53, R) >consensus UUUAC_UUUAAUACCAUACCAGAAAGGUGUUACGCGCUUUUCCCCAGGGCAUAUUUUUCCCG__UGGUGAUGGCAAAACCAGUUUGGUUUAU_________UACAUUAAAAUUU_______ ............((((.((..((((((((.....))))))))....(((.........))).........(((.....))))).))))................................. (-16.86 = -16.14 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:23:59 2011