| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,776,822 – 13,776,881 |
| Length | 59 |
| Max. P | 0.948641 |
| Location | 13,776,822 – 13,776,881 |
|---|---|
| Length | 59 |
| Sequences | 4 |
| Columns | 72 |
| Reading direction | forward |
| Mean pairwise identity | 75.57 |
| Shannon entropy | 0.35716 |
| G+C content | 0.48836 |
| Mean single sequence MFE | -13.05 |
| Consensus MFE | -11.60 |
| Energy contribution | -11.97 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.54 |
| SVM RNA-class probability | 0.948641 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13776822 59 + 27905053 ACCACCUUUGGGCGAACGCUUAACGAUCUCGUCGCAUGCACCUAAUGCUAUACAUUUCA------------- ..........(((((.((.....))...)))))((((.......))))...........------------- ( -8.60, z-score = -0.19, R) >droEre2.scaffold_4770 9896166 59 - 17746568 ACCCCCGUUGGGCAACCGCCUAACGAUCUCCUCGCAUGCACCUAAUGCUGUACAUUUUA------------- .....((((((((....))))))))........((((.......))))...........------------- ( -16.20, z-score = -3.55, R) >droYak2.chr3R 2369216 71 + 28832112 -ACCCCGUUGGGCAAACGACCAACGAUCUCGUUGCAUGCACCUAAUGCUGUACCUAUCUAUGUACGAGUUUA -....((((((........))))))..(((...((((.......)))).((((........))))))).... ( -17.60, z-score = -1.78, R) >droSec1.super_12 1744243 59 - 2123299 ACCACCUUUGGGCAAACGCCUAAUGAUCUCGUCGCAUGCACCUGAUGCUAUACAUUUCA------------- .......((((((....))))))..........((((.......))))...........------------- ( -9.80, z-score = -0.48, R) >consensus ACCACCGUUGGGCAAACGCCUAACGAUCUCGUCGCAUGCACCUAAUGCUAUACAUUUCA_____________ .....((((((((....))))))))........((((.......))))........................ (-11.60 = -11.97 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:23:57 2011