| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,776,119 – 13,776,186 |
| Length | 67 |
| Max. P | 0.788495 |
| Location | 13,776,119 – 13,776,186 |
|---|---|
| Length | 67 |
| Sequences | 6 |
| Columns | 81 |
| Reading direction | reverse |
| Mean pairwise identity | 68.00 |
| Shannon entropy | 0.56320 |
| G+C content | 0.37187 |
| Mean single sequence MFE | -10.95 |
| Consensus MFE | -5.57 |
| Energy contribution | -5.40 |
| Covariance contribution | -0.17 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.788495 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13776119 67 - 27905053 --------------UCAUUCUCUCUUUUUCUCUUGCAGAAAACAUGCGCUAAUUGUCUUUAAUUCAAUUAGGACACAGUCA --------------....................(((.......))).(((((((.........)))))))(((...))). ( -8.00, z-score = -0.70, R) >droSec1.super_12 1743552 67 + 2123299 --------------UCAUUCUCUCUUUUUCUCUUGCAGAAAACAUGCGCUAAUUGUCUUUAAUUCAAUUAGGACACAGUCA --------------....................(((.......))).(((((((.........)))))))(((...))). ( -8.00, z-score = -0.70, R) >droYak2.chr3R 2368494 67 - 28832112 --------------UCAUUCCCUCUCUUUUUCCUGCAGAAAACAUGCGCUAAUUGUCUUUAAUUCAAUUAGGACACAAGCA --------------....................(((.......)))(((...((((((..........))))))..))). ( -9.90, z-score = -1.37, R) >droEre2.scaffold_4770 9895469 67 + 17746568 --------------UCAUUCUCUCUUUUUCUCCUGCAGAAAACAUGCGCUAAUUGUCUUUAAUUCAAUUAGGACACAAGCA --------------....................(((.......)))(((...((((((..........))))))..))). ( -9.90, z-score = -1.32, R) >droPer1.super_6 4123560 75 - 6141320 UCCCCCUCUCUUUCGCUCUCCCACUGUGGUUAUGGGGGAAAAGCCCCGCUAAUUGUCUUUAAUUCAAUUACGGAA------ ((((((......((((.........))))....))))))......(((.((((((.........)))))))))..------ ( -21.00, z-score = -2.20, R) >droGri2.scaffold_14830 3471096 51 + 6267026 -----------------------CGAUUUGUUGCGUAGAAACUAUG---UAAUUGUCUUUAAUUCAAUUAAG-CGCUG--- -----------------------.(((..(((((((((...)))))---)))).)))...............-.....--- ( -8.90, z-score = -1.13, R) >consensus ______________UCAUUCUCUCUUUUUCUCUUGCAGAAAACAUGCGCUAAUUGUCUUUAAUUCAAUUAGGACACAG_CA ..................................(((.......))).(((((((.........))))))).......... ( -5.57 = -5.40 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:23:56 2011