| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,774,538 – 13,774,648 |
| Length | 110 |
| Max. P | 0.615893 |
| Location | 13,774,538 – 13,774,648 |
|---|---|
| Length | 110 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 76.91 |
| Shannon entropy | 0.35479 |
| G+C content | 0.56729 |
| Mean single sequence MFE | -32.38 |
| Consensus MFE | -14.82 |
| Energy contribution | -15.76 |
| Covariance contribution | 0.94 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.615893 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13774538 110 - 27905053 UGAAGAAAGGUCGAGGUGCUGGCAACUCGCCACUCGAGAGGCAAACCAAGUCAAGGGCCAAGAUACAAGUUUUGCACCAACAGCACCCCCGUCGCCGUCCCAUCACCUUC .((((...((.((((((((((((..((((.....))))..))............((..((((((....))))))..))..)))))))....)))))(......)..)))) ( -31.30, z-score = -1.02, R) >droSim1.chr3R 19800931 95 + 27517382 ---UGAAAGGUCGAGGUGCUGGCCACUCGCCACUCGAGAGGCAAACCAAGUCAAGGGCCAAGCUACAAGUUUUGCCCCAAACAGCACCACCUCCCCCC------------ ---.....((..(.((((((((((.((((.....)))).)))............((((.((((.....)))).))))....))))))).)..))....------------ ( -36.20, z-score = -3.45, R) >droSec1.super_12 1742055 95 + 2123299 ---UGAAAGGUCGAGGUGCUGGCCACUCGCCACUCGAGAGGCAAACCAAGUCAAGGGCCAAGCUACAAGUUUUGCCCUAAACAGCACCACCUCCCCUC------------ ---.....((..(.((((((((((.((((.....)))).)))...........(((((.((((.....)))).)))))...))))))).)..))....------------ ( -37.80, z-score = -3.85, R) >droYak2.chr3R 2367006 84 - 28832112 ---UGAAAGGUCGAGGUGCUG-------GCCACUCGAGAGCCAAACCGAGUCAAGGGCCAAGAUACAAGUUUUGCCCCAA----ACCCCUUUUGCCUC------------ ---.((((((....(((..((-------(((......).)))).))).......(((.((((((....)))))).)))..----...)))))).....------------ ( -24.20, z-score = -0.84, R) >consensus ___UGAAAGGUCGAGGUGCUGGCCACUCGCCACUCGAGAGGCAAACCAAGUCAAGGGCCAAGAUACAAGUUUUGCCCCAAACAGAACCACCUCCCCUC____________ ........(((((((..((.........))..)))))((((.............((((.((((.....)))).))))............)))).)).............. (-14.82 = -15.76 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:23:54 2011