| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,768,714 – 13,768,808 |
| Length | 94 |
| Max. P | 0.963666 |
| Location | 13,768,714 – 13,768,808 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 77.36 |
| Shannon entropy | 0.38690 |
| G+C content | 0.56329 |
| Mean single sequence MFE | -29.43 |
| Consensus MFE | -21.56 |
| Energy contribution | -21.62 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.72 |
| SVM RNA-class probability | 0.963666 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13768714 94 + 27905053 ---ACCAGCCAGCCUCCUCCAUCCCGAAUUUUUUCCGCUGCAGUCUGUGGCGAUCCAGUUUGCCACACAUUCGUGGCACAUUCCUCGAGGGGAAAAG--------- ---..........((((((......(((....))).((..((((.((((((((......)))))))).))).)..)).........)))))).....--------- ( -29.10, z-score = -2.13, R) >droAna3.scaffold_13340 11753963 84 - 23697760 ---------CCGCACUGCCCACCC---ACUUUCC-AGCAGCAGUCUGCGGCGAUCCAGUUUGCCACACAUUGGUGGCACAUUUUUUCAGAGAACGGC--------- ---------(((...((((.(((.---.......-.((((....))))(((((......))))).......)))))))..((((....)))).))).--------- ( -21.60, z-score = -0.31, R) >droEre2.scaffold_4770 9888152 85 - 17746568 -----------ACCUCCUCCAUCCCGAAUUUUUC-CGCUGCAGUCUGUGGCGAUCCAGUUUGCCACACAUUCGUGGCACAUUCCUGGAGGGGCAAAG--------- -----------..((((((((....((.....))-.((..((((.((((((((......)))))))).))).)..)).......)))))))).....--------- ( -31.20, z-score = -3.09, R) >droYak2.chr3R 2355886 94 + 28832112 -----------ACCUCCCUCAUCCCGCAUUUUCC-AGCUGCAGUCUGUGGCGAUCCAGUUUGCCACACAUUCGUGGCACACUCCUCGAGGGGCGAGGGGCAAAGCU -----------...((((((..(((.(.......-.((..(.....)..))((...(((.((((((......)))))).)))..))).)))..))))))....... ( -35.80, z-score = -2.02, R) >droSec1.super_12 1736358 92 - 2123299 ---ACCAGCCAGCCUCCUCCAUCCCGAAUUUUU--CGCUGCAGUCUGUGGCGAUCCAGUUUGCCACACAUUCGUGGCACAUUCCUCGAGGGGAAAAG--------- ---..........((((((......(((((..(--(((..(.....)..))))...)))))(((((......))))).........)))))).....--------- ( -28.60, z-score = -1.95, R) >droSim1.chr3R 19794899 96 - 27517382 ACCAGCAGCCAGCCUCCUCCAUCCCGAAUUUUUU-CGCUGCAGUCUGUGGCGAUCCAGUUUGCCACACAUUCGUGGCACAUUCCUCGAGGGGAAAAG--------- ....((.....))((((((......(((....))-)((..((((.((((((((......)))))))).))).)..)).........)))))).....--------- ( -30.30, z-score = -2.10, R) >consensus _________CAGCCUCCUCCAUCCCGAAUUUUUC_CGCUGCAGUCUGUGGCGAUCCAGUUUGCCACACAUUCGUGGCACAUUCCUCGAGGGGAAAAG_________ ....................................((((((((.((((((((......)))))))).))).)))))...(((((....)))))............ (-21.56 = -21.62 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:23:54 2011