| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,764,105 – 13,764,223 |
| Length | 118 |
| Max. P | 0.618442 |
| Location | 13,764,105 – 13,764,223 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 126 |
| Reading direction | forward |
| Mean pairwise identity | 72.80 |
| Shannon entropy | 0.47424 |
| G+C content | 0.49824 |
| Mean single sequence MFE | -28.86 |
| Consensus MFE | -15.63 |
| Energy contribution | -16.82 |
| Covariance contribution | 1.19 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.618442 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13764105 118 + 27905053 CAAACAGAACACACACGUGGUCCAACAAACACCAUGGACCAUGGUCAGUCAGCU------AGCUCCCUUCUAGCGAUUGGUGGUCUAGAUUUUUCAGCAUUUUCCGCUAUUUGGCCUUCGUUUC-- ......((((.....(((((((((..........))))))))).((((((.(((------((.......))))))))))).((((..((....))(((.......)))....))))...)))).-- ( -32.00, z-score = -2.15, R) >droAna3.scaffold_13340 11749501 113 - 23697760 --CCCAGAACACACAUUUGGUUCAUCUCCGUAGCUGACCCAUGGUCAACCGCAUUUUCGCAGCUCCCCGGUGGCGAUUGCUGGUCCAG-UUUACCACCAUUUUCCGCUAUUUCGUG---------- --....((((.((....))))))......((((((((((...)))))((((((...((((.(((....))).)))).))).)))....-................)))))......---------- ( -26.30, z-score = -0.62, R) >droYak2.chr3R 2351207 91 + 28832112 CAAACAGAACACACACGUGG-----------------ACCGUGGUCAG--------------CUCCCUUCUAGCGAUUGGUGGUCUAGAUUUUUCUGCAUUUUCCGCUGUUUGGCCUUCGUU---- (((((((..(((....)))(-----------------((((..(((.(--------------((.......))))))...)))))((((....)))).........))))))).........---- ( -19.80, z-score = 0.74, R) >droSec1.super_12 1731733 113 - 2123299 CAAACAGAACACACACGUGGUCCAA---ACACCAUGGACCAUGGUCAGCCA----------GCUCCCUUCUAGCGAUUGGUGGUCUAGAUUUUUCAGCAUUUUCCGCUAUUUGGCCUUCGUUCGUC ......((((.....(((((((((.---......)))))))))....((((----------(((.......)))...((((((...((((........)))).))))))..))))....))))... ( -32.50, z-score = -2.25, R) >droSim1.chr3R 19790322 113 - 27517382 CAAACAGAACACACACGUGGUCCAA---ACACCAUGGACCAUGGUCAGCCA----------GCUCCCUUCUAGCGAUUGGUGGUCUAGAUUUUUCUGCAUUUUCCGCUAUUUGGCCUUCGUUCGUC ......((((.....(((((((((.---......)))))))))....((((----------(((.......)))...((((((..((((....))))......))))))..))))....))))... ( -33.70, z-score = -2.47, R) >consensus CAAACAGAACACACACGUGGUCCAA___ACACCAUGGACCAUGGUCAGCCA__________GCUCCCUUCUAGCGAUUGGUGGUCUAGAUUUUUCAGCAUUUUCCGCUAUUUGGCCUUCGUU____ ......((((.....(((((((((..........)))))))))......................((...(((((...((((...............))))...)))))...)).....))))... (-15.63 = -16.82 + 1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:23:51 2011