| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,763,664 – 13,763,765 |
| Length | 101 |
| Max. P | 0.997064 |
| Location | 13,763,664 – 13,763,765 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 63.84 |
| Shannon entropy | 0.69999 |
| G+C content | 0.42717 |
| Mean single sequence MFE | -29.23 |
| Consensus MFE | -12.91 |
| Energy contribution | -14.25 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.03 |
| SVM RNA-class probability | 0.997064 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13763664 101 - 27905053 UAUAAACUGAUUGGCAAUAAUAUCUGGAUUAUU---GU------AAUGCGAAAACCAUCAUAGUGAUUAAUGCUGUCACUGGCCAAAGAGUCAAUUAAACUUGGCACAGC ......(((.(((((.........(((.((.((---(.------....))).)))))...(((((((.......))))))))))))...(((((......))))).))). ( -22.50, z-score = -1.32, R) >droEre2.scaffold_4770 9883265 110 + 17746568 CAUGAACUCAUUGGCGGCAGUGGCAAUAGCAUCUGGAUUACUGCAAUGCAAAAUCCAUCAUAGUGAUUAAGGCUGUCACUGGCCAAAGAGCCAAUUAAACUUGGCUCAGC ..........(((((..((((((((...((.....((((((((..(((.......)))..))))))))...))))))))))))))).(((((((......)))))))... ( -36.90, z-score = -2.54, R) >droYak2.chr3R 2350698 101 - 28832112 UAUGAACUCAUUGGGGGCAGUGGCAACAACAU---------UGUAAUGCAAAAUCCAUCAGAGUGAUUAAUGCUGUCACUGGCCAAAGAGCCAAUUAAACUUGGCUCAGC ..............((.(((((((((((....---------)))...(((.(((((......).))))..))))))))))).))...(((((((......)))))))... ( -30.80, z-score = -2.04, R) >droSec1.super_12 1731260 107 + 2123299 UAUGAACUCAUUGGCAAUAACAUCUGGAUUAUU---GUAAUGCGAAUGCAAAAUCCAUCAUAGUGAUUAAUGCUGUCACUGGCCAAAGAGCCAAUUAAACUUGGCUCAGC ..........(((((.........((((((.((---(((.......)))))))))))...(((((((.......)))))))))))).(((((((......)))))))... ( -33.10, z-score = -3.68, R) >droSim1.chr3R 19789860 101 + 27517382 UAUGAACUCAUUGGCAAUAACAUCUGGAUUAUU---GU------AAUGCAAAAUCCAUCAUAGUGAUUAAUGCUGUCACUGGCCAAAGAGCCAAUUAAACUUGGCUCAGC ..........(((((.........((((((.((---(.------....)))))))))...(((((((.......)))))))))))).(((((((......)))))))... ( -31.80, z-score = -3.93, R) >droMoj3.scaffold_6540 31344353 79 + 34148556 -----------------------------UAU--GCAGUCGUCGCACUCGCCGACUUUUGGAGCGGCUCUCUCGGUCAUUUGACUUGCGGUUUUUCGACCUGGCCACACA -----------------------------...--((.(((((((((...((((.(((...)))))))......((((....))))))))).....))))...))...... ( -20.30, z-score = 0.22, R) >consensus UAUGAACUCAUUGGCAAUAAUAUCUGGAUUAUU___GU___U__AAUGCAAAAUCCAUCAUAGUGAUUAAUGCUGUCACUGGCCAAAGAGCCAAUUAAACUUGGCUCAGC ..........(((((..............................(((.......)))..(((((((.......)))))))))))).(((((((......)))))))... (-12.91 = -14.25 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:23:50 2011