| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,748,545 – 13,748,627 |
| Length | 82 |
| Max. P | 0.621683 |
| Location | 13,748,545 – 13,748,627 |
|---|---|
| Length | 82 |
| Sequences | 6 |
| Columns | 83 |
| Reading direction | reverse |
| Mean pairwise identity | 77.81 |
| Shannon entropy | 0.42892 |
| G+C content | 0.36663 |
| Mean single sequence MFE | -19.75 |
| Consensus MFE | -10.14 |
| Energy contribution | -11.00 |
| Covariance contribution | 0.86 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.621683 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13748545 82 - 27905053 UUAAAGGGCGUAUUUAUUACAUAGUUGACUGAGGAUGAGCUCAGUGUAAUUAUGAUAUCCAAGGCUACUGGGAGAGUGUCCU- ....((((((.........((((((((((((((......)))))).))))))))...(((.((....)).)))...))))))- ( -24.80, z-score = -2.50, R) >droSim1.chr3R 19776345 82 + 27517382 UUAAAGAGCGUAUUUAUUACAUAGUUGACUGAGGAUGAGCUCAGUGUAAUUAUGAUAUCCAAGGCUACUUGGAGAGUGUCCU- ......((..(((((....((((((((((((((......)))))).))))))))...((((((....)))))))))))..))- ( -24.30, z-score = -2.86, R) >droSec1.super_12 1716674 79 + 2123299 UUAAAGGGCAUAUUUAUUACAUAGUUGACUGAGGAUGAGCUCAGUGUAAUUAUGAUAACCAAGGCUAC---GAGAGUGUCCU- ....(((((((.(((....((((((((((((((......)))))).))))))))........(....)---))).)))))))- ( -21.90, z-score = -2.63, R) >droYak2.chr3R 2336302 81 - 28832112 UUUAAAAGCGUUUUUAUUACAUAGUUGACCGACGAUGAGCUCAGUGUAAUUAUGAUAUCCAAGA-AACUCGGAGAGGGUUUG- ...................((((((((((.(((.....).)).)).)))))))).........(-(((((.....)))))).- ( -11.50, z-score = 0.86, R) >droEre2.scaffold_4770 9869865 82 + 17746568 UUAAAGAGCGUAUUUAUUACAUAGUUGACUGAGGAUGAGCUCAGUGUAAUUAUGAUAUCCAAGGCAACUUGGAGAGUGUCCU- ......((..(((((....((((((((((((((......)))))).))))))))...((((((....)))))))))))..))- ( -26.80, z-score = -4.04, R) >droAna3.scaffold_13340 11730929 79 + 23697760 UUAAAGCAUAAAGUUGUAAAA-AGUUUCCUAAG---UAACUUAUAGUGAUUAUAAUAAGCAAGGGUGUUUAACGAGAGCUUCU ...((((....(((..(.(.(-((((.......---.))))).).)..)))....((((((....))))))......)))).. ( -9.20, z-score = 0.93, R) >consensus UUAAAGAGCGUAUUUAUUACAUAGUUGACUGAGGAUGAGCUCAGUGUAAUUAUGAUAUCCAAGGCUACUUGGAGAGUGUCCU_ ...................((((((((((((((......)))))).))))))))........((.((((.....)))).)).. (-10.14 = -11.00 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:23:46 2011