| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,747,784 – 13,747,896 |
| Length | 112 |
| Max. P | 0.960117 |
| Location | 13,747,784 – 13,747,896 |
|---|---|
| Length | 112 |
| Sequences | 4 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 81.90 |
| Shannon entropy | 0.28992 |
| G+C content | 0.48401 |
| Mean single sequence MFE | -24.42 |
| Consensus MFE | -16.45 |
| Energy contribution | -16.96 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.55 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.68 |
| SVM RNA-class probability | 0.960117 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13747784 112 - 27905053 ACAAGCGAUAAUCAUAAAAAUGAAAAUUUUAAUAGCGCGCGUGGAGACGAAGGAGAAAAUCCCCUCUCUCUCUCUCUCACUCCUUCCACACACACUCGCUUUUCCACCGCCU ..((((((........(((((....)))))..........(((((((.((..((((........))))..)))))).)))...............))))))........... ( -23.80, z-score = -2.70, R) >droSim1.chr3R 19775612 101 + 27517382 GCAAGCGAUAAUCAUAAAAAUGAAAAUUUUAAUAGCGCGCGUGGAGACGAAGGCGAAAAUCCCCUCUCU-----------CUCCCCCGCCACCCUUCGCUUUUCCACCGCCU ..((((((........(((((....)))))....(.(((.(.(((((.(((((.(.....).))).)))-----------)))).))))).....))))))........... ( -24.00, z-score = -2.24, R) >droSec1.super_12 1715945 102 + 2123299 GCAAGCGAUAAUCAUAAAAAUGAAAAUUUUAAUAGCGCGCGUGGAGACGAAGGCGAAAAUCCCCUCUCU----------CUCCCCCCGCCACCCUUCGCUUUUCCACCGCCU ..((((((........(((((....)))))....(.(((.(.(((((.(((((.(.....).))).)))----------)))).).)))).....))))))........... ( -24.00, z-score = -2.33, R) >droEre2.scaffold_4770 9869150 88 + 17746568 GCAAGCGAUAAUCAUAAAAAUGAAAAUUUUAAUAGCGCGCGUGGAGACGCAGGCGAAAAUACCCCGUUU-----------UCC-------------CGCUUUUCCACCGCCU ....(((.....)...(((((....)))))....))(((.(((((((.((.((.((((((.....))))-----------)))-------------))).)))))))))).. ( -25.90, z-score = -2.95, R) >consensus GCAAGCGAUAAUCAUAAAAAUGAAAAUUUUAAUAGCGCGCGUGGAGACGAAGGCGAAAAUCCCCUCUCU___________UCCCCCCGCCACCCUUCGCUUUUCCACCGCCU ....(((.....)...(((((....)))))....))(((.(((((((....(((((.......................................))))))))))))))).. (-16.45 = -16.96 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:23:45 2011