| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,706,988 – 13,707,057 |
| Length | 69 |
| Max. P | 0.868374 |
| Location | 13,706,988 – 13,707,057 |
|---|---|
| Length | 69 |
| Sequences | 4 |
| Columns | 69 |
| Reading direction | forward |
| Mean pairwise identity | 99.28 |
| Shannon entropy | 0.01176 |
| G+C content | 0.70652 |
| Mean single sequence MFE | -22.55 |
| Consensus MFE | -21.67 |
| Energy contribution | -21.93 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.733717 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13706988 69 + 27905053 ACCUGACCCACCGGCGGCACCACCGGCACCGCCGAGACUGACGCCCAAUCCGCCACCGGUUCGCAGUUC ..(((....(((((.(((.....((((...)))).((.((.....)).)).))).)))))...)))... ( -23.00, z-score = -1.51, R) >droYak2.chr3R 2299200 69 + 28832112 ACCUGACCCACCGGCGGCACCACCGGCACCGCCAAGACUGACGCCCAAUCCGCCACCGGUUCGCAGUUC ..(((....(((((.(((......(((...)))..((.((.....)).)).))).)))))...)))... ( -21.20, z-score = -1.23, R) >droSec1.super_12 1675614 69 - 2123299 ACCUGACCCACCGGCGGCACCACCGGCACCGCCGAGACUGACGCCCAAUCCGCCACCGGUUCGCAGUUC ..(((....(((((.(((.....((((...)))).((.((.....)).)).))).)))))...)))... ( -23.00, z-score = -1.51, R) >droSim1.chr3R 19734868 69 - 27517382 ACCUGACCCACCGGCGGCACCACCGGCACCGCCGAGACUGACGCCCAAUCCGCCACCGGUUCGCAGUUC ..(((....(((((.(((.....((((...)))).((.((.....)).)).))).)))))...)))... ( -23.00, z-score = -1.51, R) >consensus ACCUGACCCACCGGCGGCACCACCGGCACCGCCGAGACUGACGCCCAAUCCGCCACCGGUUCGCAGUUC ..(((....(((((.(((.....((((...)))).((.((.....)).)).))).)))))...)))... (-21.67 = -21.93 + 0.25)
| Location | 13,706,988 – 13,707,057 |
|---|---|
| Length | 69 |
| Sequences | 4 |
| Columns | 69 |
| Reading direction | reverse |
| Mean pairwise identity | 99.28 |
| Shannon entropy | 0.01176 |
| G+C content | 0.70652 |
| Mean single sequence MFE | -32.70 |
| Consensus MFE | -32.70 |
| Energy contribution | -32.70 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.41 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.868374 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13706988 69 - 27905053 GAACUGCGAACCGGUGGCGGAUUGGGCGUCAGUCUCGGCGGUGCCGGUGGUGCCGCCGGUGGGUCAGGU ...((((..((((((((((...(.(((..(.((....)))..))).)...))))))))))..).))).. ( -32.70, z-score = -1.33, R) >droYak2.chr3R 2299200 69 - 28832112 GAACUGCGAACCGGUGGCGGAUUGGGCGUCAGUCUUGGCGGUGCCGGUGGUGCCGCCGGUGGGUCAGGU ...((((..((((((((((...(.(((..(.((....)))..))).)...))))))))))..).))).. ( -32.70, z-score = -1.66, R) >droSec1.super_12 1675614 69 + 2123299 GAACUGCGAACCGGUGGCGGAUUGGGCGUCAGUCUCGGCGGUGCCGGUGGUGCCGCCGGUGGGUCAGGU ...((((..((((((((((...(.(((..(.((....)))..))).)...))))))))))..).))).. ( -32.70, z-score = -1.33, R) >droSim1.chr3R 19734868 69 + 27517382 GAACUGCGAACCGGUGGCGGAUUGGGCGUCAGUCUCGGCGGUGCCGGUGGUGCCGCCGGUGGGUCAGGU ...((((..((((((((((...(.(((..(.((....)))..))).)...))))))))))..).))).. ( -32.70, z-score = -1.33, R) >consensus GAACUGCGAACCGGUGGCGGAUUGGGCGUCAGUCUCGGCGGUGCCGGUGGUGCCGCCGGUGGGUCAGGU ...((((..((((((((((...(.(((..(.((....)))..))).)...))))))))))..).))).. (-32.70 = -32.70 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:23:39 2011