| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,695,998 – 13,696,093 |
| Length | 95 |
| Max. P | 0.735799 |
| Location | 13,695,998 – 13,696,093 |
|---|---|
| Length | 95 |
| Sequences | 14 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 72.68 |
| Shannon entropy | 0.59887 |
| G+C content | 0.65253 |
| Mean single sequence MFE | -37.88 |
| Consensus MFE | -17.85 |
| Energy contribution | -17.66 |
| Covariance contribution | -0.18 |
| Combinations/Pair | 1.72 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.735799 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13695998 95 + 27905053 CGUUCUGUGCCGGAGCAGAAGUUCGAC-UAUACGGCUC-ACUGCAGCACAAUGCCACUGCCGGUGGGCUGUCA-CAGCCAGCAACUCGCCGGGAGCGG------------ (((((((((...((((....))))...-...(((((((-(((((((..........))).)))))))))))))-)).((.((.....)).))))))).------------ ( -34.00, z-score = 0.31, R) >droPer1.super_6 4023395 95 + 6141320 CGCACCGCACCGGAGCAGAAGUUCGAC-UACACGGCCC-ACUGCAGCACGAUGCCGUUGCCGGUGGGCUGCCA-CAGCCAGCAGCUUGCCGGCAACGC------------ .((.(((...))).((((..(..((..-....))..).-.)))).)).......(((((((((..((((((..-......))))))..))))))))).------------ ( -45.20, z-score = -2.63, R) >dp4.chr2 28694075 95 + 30794189 CGCACCGCCCCGGAGCAGAAGUUCGAC-UACACGGCCC-ACUGCAGCACGAUGCCGUUGCCGGUGGGCUGCCA-CAGCCAGCAGCUUGCCGGCAACGC------------ .((.(((...))).((((..(..((..-....))..).-.)))).)).......(((((((((..((((((..-......))))))..))))))))).------------ ( -45.20, z-score = -2.51, R) >droAna3.scaffold_13340 11680549 95 - 23697760 CGGACAGUGCCCGAGCAGAAAUUCGAU-UAUACGGCCC-AUUGCAGCACAAUGCCGCUGCCGGUGGGCUGCCA-CAGCCAGCAGCUUGCCGGGAGCGG------------ ......((((....((((....(((..-....)))...-.)))).))))....(((((.((((..((((((..-......))))))..)))).)))))------------ ( -42.10, z-score = -1.94, R) >droEre2.scaffold_4770 9817162 95 - 17746568 CGUUCGGUUCCGGAGCAGAAGUUCGAC-UACACGGCUC-ACUGCAGCACGAUGCCACUGCCGGUGGGCUGUCA-CAGCCAGCAGCUCGCCGGGAGCGG------------ ((((((((..((..((((.(((.((..-....))))).-.))))....))..)))....((((((((((((..-......))))))))))))))))).------------ ( -41.40, z-score = -1.41, R) >droYak2.chr3R 2280210 95 + 28832112 CGUUCGGUUCCGGAGCAGAAGUUCGAC-UAUACGGCUC-ACUGCAGCACGAUGCCACUGCCGGUGGGCUGUCA-CAGCCAGCAGCUCGCCGGGAGCGG------------ ((((((((..((..((((.(((.((..-....))))).-.))))....))..)))....((((((((((((..-......))))))))))))))))).------------ ( -41.40, z-score = -1.56, R) >droSec1.super_12 1664686 95 - 2123299 CGUUCGGUGCCGGAGCAGAAGUUCGAC-UAUACGGCUC-ACUGCAGCACAAUGCCACUGCCGGUGGGCUGUCA-CAGCCAGCAGCUCGCCGGGAGCGG------------ .(((((((((((.((..(.....)..)-)...))))..-)))).)))......((.((.((((((((((((..-......)))))))))))).)).))------------ ( -41.20, z-score = -1.27, R) >droSim1.chr3R 19723343 95 - 27517382 CGUUCGGUGCCGGAGCAGAAGUUCGAC-UAUACGGCUC-ACUGCAGCACAAUGCCACUGCCGGUGGGCUGUCA-CAGCCAGCAGCUCGCCGGGAGCGG------------ .(((((((((((.((..(.....)..)-)...))))..-)))).)))......((.((.((((((((((((..-......)))))))))))).)).))------------ ( -41.20, z-score = -1.27, R) >droWil1.scaffold_181089 1730572 95 - 12369635 CGUAGUAUUCCAGAGCAAAAGUUUGAC-UAUACCGCUC-AUUGUAGUACCAUGCCGUUGCCGGUGGGCUGUCA-CAGCCAGCAGCUUGCCGGCGCAGG------------ (((.(((((.((((((...........-......))))-..)).))))).)))((..((((((..((((((..-......))))))..))))))..))------------ ( -33.93, z-score = -1.50, R) >droVir3.scaffold_13047 12203767 98 - 19223366 CGCAGCGCACCCGAGCAAAAGUUCGAC-UAUACAGCCC-ACUGCAGCACCAUGCCCCUGCCGGCGGGCUGUCA-CAGCCAGCAGCUCGCCAACGGCGGCGG--------- .(((..((...(((((....)))))..-....(((...-.)))..))....)))(((((((((((((((((..-......))))))))))...))))).))--------- ( -38.00, z-score = -0.72, R) >droMoj3.scaffold_6540 31242040 98 - 34148556 CGCAGCGCACCUGAGCAGAAGUUCGAC-UACACGGCCC-ACUGCAGCACGAUGCCCCUGCCGGCGGGCUGUCA-CAGCCAGCAGCUCGCCAACGGCAACGG--------- .((((.((((.((.((((..(..((..-....))..).-.))))..)).).)))..)))).((((((((((..-......))))))))))..((....)).--------- ( -37.80, z-score = -0.43, R) >droGri2.scaffold_14830 3375089 107 - 6267026 CGAAGCGCACCCGACCAGAAGUUCGAU-UAUACAGCAC-AUUGCAGCACCAUGCCGCUGCCGGUGGGCUGUCA-CAGCCAGCAGCUCGCCAGCCAUUGCAACAGCAACAG ......((...(((.(....).)))..-......(((.-...(((((........))))).((((((((((..-......))))))))))......)))....))..... ( -31.90, z-score = -0.41, R) >anoGam1.chr2R 8775178 73 + 62725911 -------------UGCACCGGCCCGAC-UAUCC---CC-AGUGCAGCACGAUGCCCCUGCCCGCCGGCUACCA-UCAGCAGCAGC--ACCAGCA---------------- -------------(((((.((......-.....---))-.)))))((..((((.....(((....)))...))-)).((....))--....)).---------------- ( -17.90, z-score = 0.55, R) >triCas2.ChLG9 1936224 101 - 15222296 CCCACCCAGCCCAUGCAGAACGUCUACGCCCACUGCUCGACCAUGCCGCUACCCCAGCAUGGGGGGAUCCCCAACGGGCAGAGUCUAGUCGCUGGGAACAG--------- ....((((((....(((((.((....))....(((((((.((((((.(......).))))))(((....)))..)))))))..))).)).)))))).....--------- ( -39.10, z-score = -1.75, R) >consensus CGUACCGUGCCGGAGCAGAAGUUCGAC_UAUACGGCUC_ACUGCAGCACGAUGCCACUGCCGGUGGGCUGUCA_CAGCCAGCAGCUCGCCGGCAGCGG____________ ............((((....))))..................((((..........)))).((((((((((.........)))))))))).................... (-17.85 = -17.66 + -0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:23:37 2011