| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,681,224 – 13,681,330 |
| Length | 106 |
| Max. P | 0.509480 |
| Location | 13,681,224 – 13,681,330 |
|---|---|
| Length | 106 |
| Sequences | 8 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 70.60 |
| Shannon entropy | 0.61883 |
| G+C content | 0.40958 |
| Mean single sequence MFE | -22.32 |
| Consensus MFE | -7.02 |
| Energy contribution | -7.29 |
| Covariance contribution | 0.27 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.509480 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13681224 106 + 27905053 AACUUUGCGACUUUCAUAUUUGCACAGCAUUCGAAAUUAAACGAAUGAAUAAAACCACUGGGUGGCGGAAUUGACGGAAUAGACCGCACACCGUAUGUGGCAAGUG ................(((((((....((((((........))))))........(((..((((((((...............)))).))))....)))))))))) ( -25.96, z-score = -1.34, R) >droSim1.chr3R 19708616 97 - 27517382 AACUUUGCGACUUUCAUAUUUGCACAGCAUUCGAAAUUAAACGAAUGAAUAAAACCACUGGGUGGCGGAA---------UAGACCGCACACCGUAUGUGGCAAGUG ................(((((((....((((((........))))))........(((..((((((((..---------....)))).))))....)))))))))) ( -27.50, z-score = -2.60, R) >droSec1.super_12 1650199 97 - 2123299 AACUUUGCGACUUUCAUAUUUGCACAGCAUUCGAAAUUAAACGAAUGAAUAAAACCACUGGGUGGCGGAA---------UAGACCGCACGCCGUAUGUGGCAAGUG ................(((((((....((((((........))))))........(((..((((((((..---------....)))).))))....)))))))))) ( -27.10, z-score = -1.96, R) >droYak2.chr3R 2264944 97 + 28832112 AACUUUGCGACUUUUAUAUUUUUACAGCAUUCGAAAUUAAACGAAUGAAUGAAACCUCUGGGUGACGGAA---------UAGACGGCACUCCAUAUGUGGCAAGUG .((((.((.((........(((((...((((((........))))))..)))))....((((((.((...---------....)).))).)))...)).)))))). ( -21.90, z-score = -1.80, R) >droEre2.scaffold_4770 9802254 87 - 17746568 AACUUUGCGACUUUCAUAUUUGCACAGCAUUCGAAAUUAAACGAAUGAAUGAAA--------UGGUCUAU---------UC--CGCCACUCCACAUGUGGCAAGUG .((((...(((((((((..........((((((........)))))).))))).--------.))))...---------..--.(((((.......))))))))). ( -20.20, z-score = -1.84, R) >droAna3.scaffold_13340 11665076 98 - 23697760 AACUUUGCGACUUUUAUAUUUGCACAGCAUUCGAAAUUAAACGAAUGAA----ACUGCGGGGUGGCUGCA--GAC--CACACACCGCAUUCCAUGUAUGGUGGCUA ......((.(((..(((((........((((((........))))))..----..(((((.(((((....--).)--)))...)))))....))))).))).)).. ( -27.20, z-score = -1.70, R) >dp4.chr2 28674865 84 + 30794189 AACUUUGCGACUUUUAUAUUUGCACAGCAUUCGAAAUUAAACGAAUAAAGAUAGAGAAUAGGAAUAGGAAUAGACUGGGGAAAC---------------------- ..((.(((((.........))))).)).(((((........)))))..................(((.......))).......---------------------- ( -6.30, z-score = 0.68, R) >droPer1.super_6 4004374 100 + 6141320 AACUUUGCGACUUUUAUAUUUGCACAGCAUUCGAAAUUAAACGAAUAAAGAUAGAGAAUAGGAAUAG------ACUGGGGAAACGGUGAAUGGGGAGUGCAGAGUG .(((((((.((((((.((((..(.(((((((((........))))).....((.....))......)------.))).(....).)..))))))))))))))))). ( -22.40, z-score = -3.26, R) >consensus AACUUUGCGACUUUCAUAUUUGCACAGCAUUCGAAAUUAAACGAAUGAAUAAAACCACUGGGUGGCGGAA_________UAGACCGCACACCGUAUGUGGCAAGUG ..((.(((((.........))))).))((((((........))))))........................................................... ( -7.02 = -7.29 + 0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:23:36 2011