| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,665,613 – 13,665,709 |
| Length | 96 |
| Max. P | 0.939479 |
| Location | 13,665,613 – 13,665,709 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 46.46 |
| Shannon entropy | 0.85552 |
| G+C content | 0.46877 |
| Mean single sequence MFE | -11.12 |
| Consensus MFE | -5.95 |
| Energy contribution | -4.45 |
| Covariance contribution | -1.50 |
| Combinations/Pair | 1.71 |
| Mean z-score | -0.42 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.43 |
| SVM RNA-class probability | 0.939479 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13665613 96 + 27905053 ACCGCAUUUUCCCCUUCCUAAUUUUUCUCCGCAUUACCCCGCUCUCC---CUCGCCACGAGUUUCCACCAUCAGCAUUUUCACAUUCGUUAGGUGGCAA ...((.........................((........)).....---..((((((((((.....................))))))..)))))).. ( -10.40, z-score = -0.63, R) >droSec1.super_12 1634512 99 - 2123299 ACCGCAUUUUCCCCUUCCUAAUUUUUCUCCGCAUUACCCUGCUCUCCUCCCUCGCCACGAGUUUUCACCAUCAGCAUUUUCACAUUCGUUAGGUGGCAA ...((.........................(((......)))..........((((((((((.....................))))))..)))))).. ( -11.50, z-score = -1.15, R) >droAna3.scaffold_13340 11649999 82 - 23697760 ----------------CCCAAAUUUUCCCCAUGUCAUUUU-CCCCCCAUUUUCUGUACUCCUUGCCACCAACAACAUUUUCACAUUCGUUAGGUGGAAG ----------------........................-...................(((.((((((((...............))).)))))))) ( -8.76, z-score = -0.70, R) >droMoj3.scaffold_6540 2939897 82 + 34148556 ---------------GCUGCGACCCCCUUUUUAUUAGUUGUUAUUUUUGCAAACAUUUUUGCAGCUGCC-CUAAUGCUCUAAUGCCACCGAGGUAGGC- ---------------...(((((.............))))).....(((((((....)))))))(((((-(....((......))....).)))))..- ( -13.82, z-score = 0.81, R) >consensus _______________UCCUAAAUUUUCUCCGCAUUACCCUGCUCUCCU_CCUCGCCACGAGUUGCCACCAUCAACAUUUUCACAUUCGUUAGGUGGCAA ................................................................(((((......((......))......)))))... ( -5.95 = -4.45 + -1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:23:34 2011