| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,661,891 – 13,661,942 |
| Length | 51 |
| Max. P | 0.671523 |
| Location | 13,661,891 – 13,661,942 |
|---|---|
| Length | 51 |
| Sequences | 8 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 84.32 |
| Shannon entropy | 0.30069 |
| G+C content | 0.50509 |
| Mean single sequence MFE | -13.22 |
| Consensus MFE | -9.83 |
| Energy contribution | -9.80 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.671523 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13661891 51 + 27905053 GAAGCCAACCAAUCGGAACC--AACUUUGAGGCAAAAGUGCGUUACGGUUCCG .............(((((((--.....(((.(((....))).))).))))))) ( -13.40, z-score = -1.51, R) >droSim1.chr3R 19689028 51 - 27517382 GAAGCCAACCAAUCGGAACC--AACUUUGAGGCAAAAGUGCGUUACGGUUCCG .............(((((((--.....(((.(((....))).))).))))))) ( -13.40, z-score = -1.51, R) >droSec1.super_12 1630773 51 - 2123299 GAAGCCAACCAAUCGGAACC--AACUUUGAGGCAAAAGUGCGUUACGGUUCCG .............(((((((--.....(((.(((....))).))).))))))) ( -13.40, z-score = -1.51, R) >droYak2.chr3R 2244108 51 + 28832112 GAAGCCAACCAAUCGGAACC--UACUUUGAGGCAAAAAUGCGUUACGGUUCCG .............(((((((--.....(((.(((....))).))).))))))) ( -13.40, z-score = -2.01, R) >droEre2.scaffold_4770 9783186 51 - 17746568 GAAGCCAACCAAUCGGAACC--UACUUUGAGGCAAAAGUGCGUUACGGUUCCG .............(((((((--.....(((.(((....))).))).))))))) ( -13.40, z-score = -1.51, R) >droAna3.scaffold_13340 11646576 51 - 23697760 GGACCAAACCAAUCGGAACC--AACUUCGGACCAAAAGUGCGUUGCGGUUCCG ((......))...(((((((--.....((.((.....)).))....))))))) ( -14.10, z-score = -1.07, R) >dp4.chr2 28644517 53 + 30794189 GAAGCCAACCAAUUGGAACCGAAAUCUUGAAAUCAGAGUCCAUUGCGGUUCCG ..............(((((((....(((.......))).......))))))). ( -12.20, z-score = -1.65, R) >droPer1.super_6 3973664 53 + 6141320 GAAGCCAACCAAUUGGAACCGAAAUCUUGAAAUCAGCGUCCAUUGCGGUUCCG ..............((((((.......((....))(((.....))))))))). ( -12.50, z-score = -1.57, R) >consensus GAAGCCAACCAAUCGGAACC__AACUUUGAGGCAAAAGUGCGUUACGGUUCCG .............(((((((...(((((......))))).......))))))) ( -9.83 = -9.80 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:23:33 2011