| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,660,337 – 13,660,438 |
| Length | 101 |
| Max. P | 0.986856 |
| Location | 13,660,337 – 13,660,438 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 80.08 |
| Shannon entropy | 0.34647 |
| G+C content | 0.46529 |
| Mean single sequence MFE | -21.33 |
| Consensus MFE | -16.56 |
| Energy contribution | -16.84 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.25 |
| SVM RNA-class probability | 0.986856 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13660337 101 - 27905053 -ACUUGCAACAUACAACAUCACACCGCAAGUGGGAAAGUUCUUCAACCCGGAAACUUUCCACACGCCAGAACAAUUUGUUUCGCUUCGAAGGCAAAUCCUUC -((((((..................)))))).((((((((.(((.....)))))))))))....((..((((.....)))).))...(((((.....))))) ( -21.87, z-score = -1.94, R) >droSim1.chr3R 19687476 102 + 27517382 AACAUACAACAUACAACACCACACCGCAAGUGGGAAAGUUCUCCAACCCGGAAACUUUCCACACGCCAGAACAAUUUGUUUCGCUUCGAAGGCAAAUCCUUC .........................((..(((((((((((.(((.....))))))))))).)))....((((.....)))).))...(((((.....))))) ( -23.80, z-score = -3.35, R) >droSec1.super_12 1629263 102 + 2123299 AACAUACAACAUACAACACCACACCGCAAGUGGGAAAGUUCUACAACCCGGAAACUUUCCACACGCCAGAACAAUUUGUUUCGCUUCGAAGGCAAAUCCUUC .........................((..(((((((((((((.......)).)))))))).)))....((((.....)))).))...(((((.....))))) ( -20.20, z-score = -2.15, R) >droYak2.chr3R 2242570 88 - 28832112 --------------AAUACCACACCACAAGUGGGGAAGGUCUCCAGCCCGGAAACUUUCCACACGCCAGAACAAUUUGUUUAGCUUCGAAGGCAAAUCCUUC --------------....((((.......))))(((((((.(((.....))).)))))))....((..((((.....)))).))...(((((.....))))) ( -24.60, z-score = -2.38, R) >droAna3.scaffold_13340 11645161 85 + 23697760 -----------------ACCACACCUCAAGUGGCAAAGUUCUCUCCCGAAGAAACUUUCCACACGCCCGAACAAUUUGCUUCGACUCAGAGACAAAUCUUUG -----------------.......(((..((((.((((((.(((.....))))))))))))).....((((........)))).....)))........... ( -16.20, z-score = -1.78, R) >consensus _AC_U_CAACAUACAACACCACACCGCAAGUGGGAAAGUUCUCCAACCCGGAAACUUUCCACACGCCAGAACAAUUUGUUUCGCUUCGAAGGCAAAUCCUUC .............................(((((((((((.(((.....))))))))))).)))....(((..((((((((((...))))).)))))..))) (-16.56 = -16.84 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:23:32 2011