| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,647,097 – 13,647,195 |
| Length | 98 |
| Max. P | 0.998132 |
| Location | 13,647,097 – 13,647,195 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 70.09 |
| Shannon entropy | 0.53100 |
| G+C content | 0.50546 |
| Mean single sequence MFE | -34.25 |
| Consensus MFE | -18.82 |
| Energy contribution | -19.19 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.53 |
| Mean z-score | -2.70 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.27 |
| SVM RNA-class probability | 0.998132 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13647097 98 - 27905053 UGCCUGGCUUCUGCAGUGUUUUCCGUUUUCGAGAGGACUCCACCCAAAAAAAGAGGGGUGGGGGAGGAAUUUUAGGGGAGCCAGGCAAAUGAAAUAUC ((((((((((((..((....((((...(((....)))((((((((..........))))))))..))))..))..))))))))))))........... ( -42.50, z-score = -4.14, R) >droEre2.scaffold_4770 9764090 83 + 17746568 UGCCUGGCUCCUGUAGUGUUUUCCG-UUUCGAGAGGACU----CCCCCGAA----------GGGGGAAAUUUUAGGGGAGCCAGGCAAAUGAAAUAUC ((((((((((((.(((.(((((((.-(((((.(.((...----.)))))))----------).))))))).))).))))))))))))........... ( -45.30, z-score = -6.16, R) >droYak2.chr3R 2228518 82 - 28832112 UGCCUGGUUUCUGCAGUGUUU--CGUUUUCGAGAGGACU-----CCCCGAA---------GGUGGGAAAUUUUAGGAGAGCUGGGCAAAUGAAAAAUC ((((..(((.((.(..(.(((--((....))))).)..(-----((((...---------.).)))).......).)))))..))))........... ( -26.30, z-score = -1.65, R) >droSim1.chr3R 19673925 90 + 27517382 UGCCUGGCUUCUGCAGUGUUUUCCGUUUUCGAGAGGAGUCCACCCCCCAAAA--------GGGGGGAAAUUUUAGGGGAGCCGGGCAAAUGAAAUAUC ((((((((((((....((..((((..........))))..))((((((....--------)))))).........))))))))))))........... ( -40.80, z-score = -3.54, R) >droSec1.super_12 1615937 89 + 2123299 UGCCUGCCUUCUGCAGUGUUUUCCGUUUUCGAGGGGAGUCCA-CCCCCAAAA--------GGGGGGAAAUUUUAGGGGAGCCAGGCAAAUGAAAUAUC (((((((((((((.(((.((..((.((((.(.((((......-)))))))))--------.))..)).))).)))))).).))))))........... ( -33.40, z-score = -1.50, R) >droGri2.scaffold_14830 3316696 80 + 6267026 UGCAGAAGACCUA-AAUGAACGGCGCUUUUGGGGAGG-------CGACGC----------GGGUAGCUGUAGUCAAAUUGGUAGGCAAAUGAAAUGCA (((((...((((.-......((.((((((....))))-------)).)).----------))))..))))).............(((.......))). ( -17.20, z-score = 0.77, R) >consensus UGCCUGGCUUCUGCAGUGUUUUCCGUUUUCGAGAGGACU____CCCCCAAA_________GGGGGGAAAUUUUAGGGGAGCCAGGCAAAUGAAAUAUC ((((((((((((...............(((....))).......((((..............)))).........))))))))))))........... (-18.82 = -19.19 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:23:30 2011