| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,643,437 – 13,643,529 |
| Length | 92 |
| Max. P | 0.715298 |
| Location | 13,643,437 – 13,643,529 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 87.17 |
| Shannon entropy | 0.25004 |
| G+C content | 0.52421 |
| Mean single sequence MFE | -32.23 |
| Consensus MFE | -23.62 |
| Energy contribution | -23.37 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.715298 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13643437 92 + 27905053 GACUCCUCUGCAGUUGGUAAACUCGGUUGCCACAAAGUGAGUGAGUCAUUAUGGUGGCAAGCGGAGGGUUUUUGUGGUCGGCAUUUGGAUGG ....(((((((((((....))))...(((((((..(((((.....)))))...))))))))))))))((((..(((.....)))..)))).. ( -30.00, z-score = -1.51, R) >droSec1.super_12 1612364 92 - 2123299 GACUCCUCUGCAGUUGGUAAACUCGGUUGCCACAAAGUGAGUGAGUCAUUAUGGUGGCAAGCGGAGGGUUUUUGUGGCCGGCAUUUGGAUGG ....(((((((((((....))))...(((((((..(((((.....)))))...))))))))))))))((((..(((.....)))..)))).. ( -30.00, z-score = -1.00, R) >droSim1.chr3R 19670283 92 - 27517382 GAAACCUCUGCAGUUGGUAAACUCGGUUGCCACAAAGUGAGUGAGUCAUUAUGGUGGCAAGCGGAGGGUUUUUGUGGCCGGCAUUUGGAUGG ....(((((((((((....))))...(((((((..(((((.....)))))...))))))))))))))((((..(((.....)))..)))).. ( -30.40, z-score = -1.50, R) >droYak2.chr3R 2224541 88 + 28832112 GACUCCUCUGCAGUUGGUAAACUCGGUUGCCACAAAGUGAGU----CAUUAUAGUGGCAAGCGGAGGGUUUUUGUGGCCAGCAUGUGGAUGG ....((((..(((((((((((((((.(((((((...((((..----..)))).))))))).))...))))).....)))))).))..)).)) ( -30.50, z-score = -1.70, R) >droEre2.scaffold_4770 9760544 92 - 17746568 GACUCCUCUGCAGUUGGUAAACUCGGUUGCCACAAAGUGAGUGAGUCAUUAUGGUGGCAAGCGGAGGGUUUUUGUGGCCAGCAUUUGGAUGG (((.(((((((((((....))))...(((((((..(((((.....)))))...))))))))))))))))).......((((...)))).... ( -30.30, z-score = -1.18, R) >droAna3.scaffold_13340 11629834 88 - 23697760 UAGUCCUCAGCCCGUGGUAAACUCGGUUGCCGCCGAGUGAGUGAGUCAUUAUGGUGGCAACUGGGG----UUUGUGGCCAAAGCCAGGGGUG .........((((.((((...(((((((((((((((((((.....))))).)))))))))))))).----((((....)))))))).)))). ( -42.20, z-score = -4.18, R) >consensus GACUCCUCUGCAGUUGGUAAACUCGGUUGCCACAAAGUGAGUGAGUCAUUAUGGUGGCAAGCGGAGGGUUUUUGUGGCCAGCAUUUGGAUGG ...(((......((((((...(((.((((((((..(((((.....)))))...))))))).).)))..........))))))....)))... (-23.62 = -23.37 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:23:28 2011