| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,641,405 – 13,641,476 |
| Length | 71 |
| Max. P | 0.989405 |
| Location | 13,641,405 – 13,641,476 |
|---|---|
| Length | 71 |
| Sequences | 5 |
| Columns | 71 |
| Reading direction | forward |
| Mean pairwise identity | 98.87 |
| Shannon entropy | 0.02034 |
| G+C content | 0.50141 |
| Mean single sequence MFE | -25.64 |
| Consensus MFE | -25.80 |
| Energy contribution | -25.64 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.36 |
| Structure conservation index | 1.01 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.37 |
| SVM RNA-class probability | 0.989405 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13641405 71 + 27905053 GAGUGCCCUGGGCAGCGACAACUGCAAAGUGUUAUUAAGUUGAGUUGUUGUUGUGCCGCUAUUACGGUGGC ...........((((((((((((.(((..((....))..)))))))))))))))((((((.....)))))) ( -25.70, z-score = -2.24, R) >droSec1.super_12 1610334 71 - 2123299 GAGUGCCCUGGGCAGCGACAACUGCAAAGUGUUAUUAAGUUGAGUUGUUGUUGUGCCGCUAUUACGGUGGC ...........((((((((((((.(((..((....))..)))))))))))))))((((((.....)))))) ( -25.70, z-score = -2.24, R) >droSim1.chr3R 19668260 71 - 27517382 GAGUGCCCUGGACAGCGACAACUGCAAAGUGUUAUUAAGUUGAGUUGUUGUUGUGCCGCUAUUACGGUGGC ...........((((((((((((.(((..((....))..)))))))))))))))((((((.....)))))) ( -25.40, z-score = -2.68, R) >droYak2.chr3R 2222624 71 + 28832112 GAGUGCUCUGGGCAGCGACAACUGCAAAGUGUUAUUAAGUUGAGUUGUUGUUGUGCCGCUAUUACGGUGGC ...........((((((((((((.(((..((....))..)))))))))))))))((((((.....)))))) ( -25.70, z-score = -2.39, R) >droEre2.scaffold_4770 9758483 71 - 17746568 GAGUGCCCUGGGCAGCGACAACUGCAAAGUGUUAUUAAGUUGAGUUGUUGUUGUGCCGCUAUUACGGUGGC ...........((((((((((((.(((..((....))..)))))))))))))))((((((.....)))))) ( -25.70, z-score = -2.24, R) >consensus GAGUGCCCUGGGCAGCGACAACUGCAAAGUGUUAUUAAGUUGAGUUGUUGUUGUGCCGCUAUUACGGUGGC ...........((((((((((((.(((..((....))..)))))))))))))))((((((.....)))))) (-25.80 = -25.64 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:23:28 2011