Locus 10405

Sequence ID	dm3.chr3R
Location	13,613,326 – 13,613,396
Length	70
Max. P	0.612213

overview

Window 9

Location	13,613,326 – 13,613,396
Length	70
Sequences	5
Columns	70
Reading direction	forward
Mean pairwise identity	95.43
Shannon entropy	0.07931
G+C content	0.50000
Mean single sequence MFE	-12.94
Consensus MFE	-11.80
Energy contribution	-11.48
Covariance contribution	-0.32
Combinations/Pair	1.11
Mean z-score	-1.43
Structure conservation index	0.91
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.25
SVM RNA-class probability	0.612213
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 13613326 70 + 27905053
GUGGCCCAGAGACCUUGCCCGUCUCUUUUGCAUUGCAAAUCAAACGAUUCUCCAAGUUUGUGCCCCCCAU
..(((..((((((.......))))))(((((...))))).(((((..........))))).)))...... ( -13.80, z-score =  -1.47, R)
>droEre2.scaffold_4770 9728558 70 - 17746568
GUGGCCCAGAGACCUUGCCAGUCUCUUUUGCAUUGCAAAUCAAACGAUUCUCCCAGUUCGUACCCCCCAU
((((...((((((.......))))))(((((...)))))....((((..........)))).....)))) ( -12.20, z-score =  -1.36, R)
>droYak2.chr3R 2192051 70 + 28832112
GUGGCCCAGAGACCUUGCCAGUCUCUUUUGCAUUGCAAAUCAAAUGAUUCUCCCAGUUCGUACCCCCCAU
((((...((((((.......))))))(((((...)))))...........................)))) ( -10.50, z-score =  -0.48, R)
>droSec1.super_12 1582341 70 - 2123299
GUGGCCCAGAGACCUUGCCAGUCUCUUUUGCAUUGCAAAUCAAACGAUUCUCCCAGUUCGUAUCCACCAU
((((...((((((.......))))))(((((...)))))....((((..........))))..))))... ( -14.10, z-score =  -1.92, R)
>droSim1.chr3R 19640230 70 - 27517382
GUGGCCCAGAGACCUUGCCAGUCUCUUUUGCAUUGCAAAUCAAACGAUUCUCCCAGUUCGUAUCCACCAU
((((...((((((.......))))))(((((...)))))....((((..........))))..))))... ( -14.10, z-score =  -1.92, R)
>consensus
GUGGCCCAGAGACCUUGCCAGUCUCUUUUGCAUUGCAAAUCAAACGAUUCUCCCAGUUCGUACCCCCCAU
((((...((((((.......))))))(((((...)))))....((((..........)))).....)))) (-11.80 = -11.48 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:23:20 2011