| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,612,202 – 13,612,296 |
| Length | 94 |
| Max. P | 0.520424 |
| Location | 13,612,202 – 13,612,296 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 90.21 |
| Shannon entropy | 0.17509 |
| G+C content | 0.50476 |
| Mean single sequence MFE | -31.35 |
| Consensus MFE | -25.04 |
| Energy contribution | -27.12 |
| Covariance contribution | 2.08 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.520424 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13612202 94 - 27905053 UAUUCCGGCGACCUUGAGUCGCUUCCAAUUGCGCGUCGCAGGUGCGAUUAUGCACAUUAGAUGCAUUUGUAUCUGCCGUUUUGACAAGUGCAAG ......((((((.....)))))).....((((((...((((((((((..((((((....).))))))))))))))).((....))..)))))). ( -32.10, z-score = -2.27, R) >droEre2.scaffold_4770 9727446 84 + 17746568 UAUUCCGGCGACCUUGAGGCGC-UCUAAUUGCGCGACGCAGGUGCGA---------UUAGGUGCAUUUGUAUCUGCCGUUUUGACAAGUGCAAG ......((((.((....)))))-)((((((((((.......))))))---------)))).(((((((((.............))))))))).. ( -28.42, z-score = -1.15, R) >droYak2.chr3R 2190913 94 - 28832112 UAUUCCGGCGACCUUGAGGAGCUUCUAUUUGCGCGACGCAGUUGCGAUUAUGCACAUUAGGUGCAUUAGUAUCUGUCGUUUUGACAAGUGCAAC ......(((..((....)).))).....(((((((((((((.(((....((((((.....))))))..))).))).)))).......)))))). ( -26.01, z-score = -0.61, R) >droSec1.super_12 1581229 94 + 2123299 AAUUCCGGCGACCUUGAGGCGCUUCCAAUUGCGCGUCGCAGGUGCGAUUGUGCACAUUAGGUGCAUUUGUAUCUGCCGUUUUGACAAGUGCAAG ......((((.((....)))))).....((((((...((((((((((..((((((.....)))))))))))))))).((....))..)))))). ( -35.10, z-score = -2.02, R) >droSim1.chr3R 19639154 94 + 27517382 UAUUCCGGCGACCUUGAGGCGCUUCCAAUUGCGCGUCGCAGGUGCGAUUGUGCACAUUAGGUGCAUUUGUAUCUGCCGUUUUGACAAGUGCAAG ......((((.((....)))))).....((((((...((((((((((..((((((.....)))))))))))))))).((....))..)))))). ( -35.10, z-score = -2.06, R) >consensus UAUUCCGGCGACCUUGAGGCGCUUCCAAUUGCGCGUCGCAGGUGCGAUUAUGCACAUUAGGUGCAUUUGUAUCUGCCGUUUUGACAAGUGCAAG ......((((.((....)))))).....((((((...((((((((((..((((((.....)))))))))))))))).((....))..)))))). (-25.04 = -27.12 + 2.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:23:19 2011