| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,603,504 – 13,603,616 |
| Length | 112 |
| Max. P | 0.690685 |
| Location | 13,603,504 – 13,603,616 |
|---|---|
| Length | 112 |
| Sequences | 4 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 75.80 |
| Shannon entropy | 0.39073 |
| G+C content | 0.34225 |
| Mean single sequence MFE | -24.97 |
| Consensus MFE | -11.28 |
| Energy contribution | -10.96 |
| Covariance contribution | -0.31 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.690685 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13603504 112 - 27905053 -----CAGUAGAUAAUAAGUACUUUUUGAAUCAGUUCUAAGGAAAGUUUUCGGAACCCUAUUUCCAGAAAUAGACUUUCAACACGACUAUUCAAGGGAAAGUACCCCUUUCCUACUA -----.(((((..((...(((((((((((((.((((.....((((((((((((((......)))).)))...))))))).....)))))))))...))))))))...))..))))). ( -28.50, z-score = -2.80, R) >droSim1.chr3R 19630560 111 + 27517382 -----CAAUAAGUAACCAGAACUGUAUGAAUCAGUUCUGAGUAGAGUUUUCGGAAGACUAUUUUCAAAAAUAUACUUU-AACACGACUAUUCAAGGGAAAGUCCCCCUUUUCCACUA -----.....(((.((((((((((.......)))))))).)).((((..(((((((..(((((....)))))..))))-....)))..))))..(((((((.....)))))))))). ( -25.50, z-score = -2.25, R) >droSec1.super_12 1572643 111 + 2123299 -----CAAUAAGUAAUAAGUUCUUUAUGAAUCAGUUCUGAGUACAGUUUUCGGAAGACUAUUUCCAAAAAUAUGCUUC-AAUACGACUAUUCAAGGGAAAGUCCCCCUUUUCCACUA -----.....(((.............(((((.((((.((((((..(((((.(((((....))))).))))).))).))-)....))))))))).(((((((.....)))))))))). ( -20.60, z-score = -1.17, R) >droEre2.scaffold_4770 9718804 110 + 17746568 UUCCCCAAAAUUUAAAUAGUCAUUUUUAGAUAAGUU-------GAGUUUUCGGAACACUAUUUUCCGAAAUAGACUUUCAAGACGAUUAUUCAAAGGAAAGUAGCCGUUUCGGAAUA ((((..(((((((((...(((.......)))...))-------))))))).(((((.(((((((((((((.....)))).....((....))...)))))))))..))))))))).. ( -25.30, z-score = -2.76, R) >consensus _____CAAUAAGUAAUAAGUACUUUAUGAAUCAGUUCUGAGUAGAGUUUUCGGAACACUAUUUCCAAAAAUAGACUUU_AACACGACUAUUCAAGGGAAAGUACCCCUUUCCCACUA ..........................(((((.((((.......(((((((.((((......)))).)))....)))).......))))))))).(((((((.....))))))).... (-11.28 = -10.96 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:23:18 2011