| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,591,619 – 13,591,713 |
| Length | 94 |
| Max. P | 0.823059 |
| Location | 13,591,619 – 13,591,713 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 74.02 |
| Shannon entropy | 0.44526 |
| G+C content | 0.50705 |
| Mean single sequence MFE | -25.24 |
| Consensus MFE | -10.56 |
| Energy contribution | -11.12 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.823059 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13591619 94 + 27905053 --CUUGCCACUUUUCUUUCAAUUUAUUGUUCCCUUCGGAAAG-ACCCCAUCCUUGGUCAUUCCGGCC--UGGACUUCC--UCCAACCAACC----CAGUGGCCCA---- --...((((((.........................((((.(-(((........)))).))))((..--((((.....--)))).))....----.))))))...---- ( -25.00, z-score = -3.10, R) >droAna3.scaffold_13340 12885451 109 - 23697760 CGUUUGCCAUCUUCUUUUCAAUUUAUUGUUCUCUUGGAGAGUUGCAUCCUCUUUCAUCCUCCCAGACCAUGGCAUUCCGGUCUGGACCUUCCCGUUCCCGGUCCUGCCA .(..((((((........(((....)))...(((.((((.(.((.(......).)).))))).)))..))))))..).(((..(((((...........))))).))). ( -25.00, z-score = -1.63, R) >droYak2.chr3R 2169106 100 + 28832112 CUUUUGCAACUUUUCUUCCAAUUUAUUGUUCCCCUCGGAAAG-ACACCAUCCUCGGGCAUUCCGGCC--UGGACUUCC--UCCCACCAGUGGGAGUAGUGGCCUA---- ....(((.....................((((....))))..-...((......)))))....((((--...(((..(--(((((....)))))).)))))))..---- ( -25.20, z-score = 0.03, R) >droSec1.super_12 1560823 96 - 2123299 CUUUUGCCACUUUUCUUUCAAUUUAUUGUUCCCUUCGGAAAG-ACCCCAUCCUCGGUCAUUCCGGCC--UGGACUUCC--UCCAACCAACC----AAGUGGCCCA---- .....(((((((...............((((...((((((.(-(((........)))).))))))..--.))))....--...........----)))))))...---- ( -26.01, z-score = -3.50, R) >droSim1.chr3R 19617198 96 - 27517382 CUUUUGCCACUUUUCUUUCAAUUUAUUGUUCCCUUCGGAAAG-ACCCCAUCCUCGGUCAUUCCGGCC--UGGACUUCC--UCCAACCAACC----UAGUGGCCCA---- .....((((((.........................((((.(-(((........)))).))))((..--((((.....--)))).))....----.))))))...---- ( -25.00, z-score = -3.30, R) >consensus CUUUUGCCACUUUUCUUUCAAUUUAUUGUUCCCUUCGGAAAG_ACCCCAUCCUCGGUCAUUCCGGCC__UGGACUUCC__UCCAACCAACC____UAGUGGCCCA____ .....((((((.................((((....))))......(((...((((.....))))....)))........................))))))....... (-10.56 = -11.12 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:23:17 2011