| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,580,726 – 13,580,861 |
| Length | 135 |
| Max. P | 0.893558 |
| Location | 13,580,726 – 13,580,861 |
|---|---|
| Length | 135 |
| Sequences | 11 |
| Columns | 135 |
| Reading direction | forward |
| Mean pairwise identity | 71.67 |
| Shannon entropy | 0.60957 |
| G+C content | 0.50547 |
| Mean single sequence MFE | -40.33 |
| Consensus MFE | -16.67 |
| Energy contribution | -16.83 |
| Covariance contribution | 0.15 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.893558 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13580726 135 + 27905053 CAACGCGAGCAGCCAGACGAUUAGGAUCAUGAUGAGGGCCAAUCGUUUGGAGCGCCGUUUACGGGAGUACGUGAGCGGUCUGGUCACGGCCAAAUAUCUGUCGGAUGGACGUGAAGGAUGCAAAGAUUUACGAUA ....(((.((..((((((((((.((.((.....))...)))))))))))).))((((((((((......))))))))))((..(((((.(((....((.....))))).))))).)).))).............. ( -45.50, z-score = -1.73, R) >droGri2.scaffold_14830 1274606 114 + 6267026 UAAUGCCAGUAUCCAAACGAUAAGAAUCAUUAGAAGCGCAAGGCGCUUGGAACGUCGUUUCCUUGAAUAGGUGAGUGGUUGGGUAACAGCCAGGUAUCUA--GAAUGUUUAAGAUG------------------- .((((...((.(((....(((....))).....((((((...)))))))))))..))))..((((((((((((..((((((.....))))))..))))).--....)))))))...------------------- ( -28.50, z-score = -1.02, R) >droVir3.scaffold_12855 10080135 112 + 10161210 UAAUGCCAGGAUCCAAACGAUAAGAAUCAUUAAAAGCGCGAGGCGCUUAGAACGCCGUUUCCGAGAAUAAGUAAGUGGCUGUGUAACAGCAAGGUAUCUA--AAAAGU--AAAAUU------------------- ..(((((.(((..(....(((....))).....((((((...))))))........)..)))...............((((.....))))..)))))...--......--......------------------- ( -23.30, z-score = -0.73, R) >droPer1.super_6 1270146 121 + 6141320 CAGUGCCAGCAGCCAGACGAUUAGGAUCAUUAUGAGUGCCAAUCGUUUCGAGCGCCGCUUACGCGAGUACGUGAGCGGCCUGGUGACGGCCAAAUAUCUGAUGGAUAGACG--AACGAAGUUA------------ ....(((((..(((((((((((.((.((.....))...)))))))))).).))((((((((((......)))))))))))))))..((..(...((((.....))))...)--..))......------------ ( -42.00, z-score = -2.20, R) >dp4.chr2 25936587 121 + 30794189 CAGUGCCAGCAGCCAGACGAUUAGGAUCAUUAUGAGGGCCAAUCGUUUCGAGCGCCGCUUACGUGAGUACGUGAGCGGCCUGGUGACGGCCAAAUAUCUGAUGGAUAGACG--AACGAAGUUA------------ ....(((((..(((((((((((.((.((.....))...)))))))))).).))(((((((((((....))))))))))))))))..((..(...((((.....))))...)--..))......------------ ( -43.10, z-score = -2.52, R) >droAna3.scaffold_13340 12875086 127 - 23697760 AAGGGCCAGAAGCCAGACGAUUAGGAUCAUGAUUAGAGCCAAGCGUUUGGAGCGCCGUUUACGGGAGUACGUGAGCGGCCUGGUCACGGCCAAGUAUCUGUCGGAUGAACGGGAAAGAUUUACGUUG-------- ...((((((...(((((((....((.((.......)).))...)))))))...((((((((((......)))))))))))))))).((((.....((((.(((......)))...))))....))))-------- ( -44.50, z-score = -2.30, R) >droEre2.scaffold_4770 9696224 129 - 17746568 CAACGCGAGCAGCCAGACGAUUAGGAUCAUGAUGAGGGCCAAUCGUUUGGAGCGCCGUUUACGGGAGUACGUGAGCGGCCUGGUCACGGCCAAAUAUCUGUCGGAUGGCCA-----GAUGCAA-GAUGUACGAUU .....((.(((.((((((((((.((.((.....))...)))))))))))).((((((((((((......))))))))))(((((((((((.........))))..))))))-----)..))..-..))).))... ( -51.90, z-score = -3.30, R) >droYak2.chr3R 2158540 135 + 28832112 CAACGCGAGCAGCCAGACUAUUAGGAUCAUGAUGAGGGCCAAUCGUUUCGAGCGCCGUUUACGGGAGUACGUGAGUGGCCUGGUCACGGCCAAAUAUCUGUCGGAUGGACGUAAAGGAUGCAAGGAUUUACGAUU ........(((.(((((.((((.((.((.((((..((((((.(((...((.((.(((....)))..)).))))).)))))).)))).)))).)))))))(((.....))).....)).))).............. ( -37.30, z-score = 0.55, R) >droSec1.super_12 1542540 135 - 2123299 CAACGCGAGCAGCCAGACGAUUAGGAUCAUGAUGAGGGCCAAUCGUUUGGAGCGCCGUUUACGGGAGUACGUAAGCGGCCUGGUCACGGCCAAAUAUCUGUGGGAUGAACGUGAAGGAUGCAAAGAUUUACGAUA ...((.((.(((((((((((((.((.((.....))...))))))))))))...((((((((((......))))))))))))).)).)).(((........)))......((((((...........))))))... ( -47.50, z-score = -2.76, R) >droSim1.chr3R 19606688 135 - 27517382 CAACGCGAGCAGCCAGACGAUUAGGAUCAUGAUGAGGGCCAAUCGUUUGGAGCGCCGUUUACGGGAGUACGUGAGCGGCCUGGUCACGGCCAAAUAUCUGUGGGAUGAACGUGAAGGAUGCAAAGAUUUACGAUA ...((.((.(((((((((((((.((.((.....))...))))))))))))...((((((((((......))))))))))))).)).)).(((........)))......((((((...........))))))... ( -47.60, z-score = -2.60, R) >anoGam1.chr2R 12699775 125 - 62725911 CAGUGCCAGCACCCAUACGACCAGGAUCAUCAGCAGUGCCAGCCGUUUCGAGCGCCGGCGACGGGAAUAAUUUAAUGGUUGCGUUACGGCUAGAUAUCUGUGAAAGGUACAAGAUUACAACAAUU---------- ..(((((..(((...........((((.((((((.((((((((((((.....(.(((....))))........)))))))).).))).))).))))))))))...)))))...............---------- ( -32.42, z-score = -0.26, R) >consensus CAACGCCAGCAGCCAGACGAUUAGGAUCAUGAUGAGGGCCAAUCGUUUGGAGCGCCGUUUACGGGAGUACGUGAGCGGCCUGGUCACGGCCAAAUAUCUGUCGGAUGGACGUGAAGGAUGCAA_G__________ ........((....(((((....((..(.......)..))...)))))...))((((((((((......))))))))))..(((....)))............................................ (-16.67 = -16.83 + 0.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:23:16 2011