| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,580,092 – 13,580,168 |
| Length | 76 |
| Max. P | 0.907371 |
| Location | 13,580,092 – 13,580,168 |
|---|---|
| Length | 76 |
| Sequences | 6 |
| Columns | 76 |
| Reading direction | reverse |
| Mean pairwise identity | 80.53 |
| Shannon entropy | 0.38443 |
| G+C content | 0.47397 |
| Mean single sequence MFE | -19.50 |
| Consensus MFE | -12.35 |
| Energy contribution | -13.31 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.19 |
| SVM RNA-class probability | 0.907371 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13580092 76 - 27905053 UUUCGAGACCUCCGAGCAGACUGACUGGCGACACCCAGCUGAACAAACGAAUAUAAUUAGCUGGCAAUUGUCUGCU ..(((.(....))))((((((....((....)).((((((((..............)))))))).....)))))). ( -21.44, z-score = -2.83, R) >droSim1.chr3R 19605105 76 + 27517382 UUUCGAGUACUCCGAGCAGACUGACUGGCGACACCCAGCUGAACAAACGAAUAUAAUUAGCUGGCAAUUGUCUGCU ..(((.......)))((((((....((....)).((((((((..............)))))))).....)))))). ( -21.04, z-score = -2.33, R) >droSec1.super_12 1541895 76 + 2123299 UUUCGAGUCCUCCGAGCAGACUGACUGGCGACAACCAGCUGAGCAAACGAAUAUAAUUAGCUGGCAAUUGUCUGCU ..(((.......)))((((((....((....)).((((((((..............)))))))).....)))))). ( -22.34, z-score = -1.87, R) >droYak2.chr3R 2157901 76 - 28832112 UUUCGAGACCUCCAAGCAAACUGAGUGGCGACACUAAGCUGAACAAACGAAUAUAAUUAGCUGACAAUUGUUUGCU ..............(((((((..((((....)))).((((((..............)))))).......))))))) ( -17.14, z-score = -2.13, R) >droEre2.scaffold_4770 9695640 76 + 17746568 UUUCGGGACCUCCGAGCAGACUGACUGGCGACACCCAGCUGCACAAACGAAUAUAAUUAGCUGGCAAUUGUCUGCU ..((((.....))))((((((....((....)).(((((((................))))))).....)))))). ( -22.79, z-score = -2.28, R) >droAna3.scaffold_13340 12874466 61 + 23697760 ---------CUCUGA-CGGGUCACCAAGUCGGGC---GCAGAACAAACGAAUAUAAUUAGGUGGCAAUUGUCUU-- ---------....((-((.((((((((.(((...---..........)))......)).))))))...))))..-- ( -12.22, z-score = -0.26, R) >consensus UUUCGAGACCUCCGAGCAGACUGACUGGCGACACCCAGCUGAACAAACGAAUAUAAUUAGCUGGCAAUUGUCUGCU ..............(((((((....((....)).((((((((..............)))))))).....))))))) (-12.35 = -13.31 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:23:15 2011