| Sequence ID | dm3.chr2L |
|---|---|
| Location | 746,687 – 746,801 |
| Length | 114 |
| Max. P | 0.810927 |
| Location | 746,687 – 746,801 |
|---|---|
| Length | 114 |
| Sequences | 8 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 81.15 |
| Shannon entropy | 0.38391 |
| G+C content | 0.37251 |
| Mean single sequence MFE | -29.48 |
| Consensus MFE | -14.10 |
| Energy contribution | -14.10 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.810927 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 746687 114 + 23011544 AUUCAGAAAGUUGCGAAAUGUUAAAUAUUUGUAACACCUGAAAAAUUGAAUAUAUUUCAUUAAAAGUAUAAAGUUUUCCGACGGCAGCGGCUGUUGUGGAAACAUCAGGAGAAU-- ((((.....((((((((((.....)).)))))))).(((((.........(((((((......)))))))..(((((((((((((....))))))).)))))).))))).))))-- ( -32.60, z-score = -4.46, R) >droPer1.super_8 3801094 111 - 3966273 GCGCCGAAAGUUGCGAAAUGUUAAAUAUUUGCAACACCUGAAAAAUUGAAUAUUUUUCAUUAAAAGUUU---CCCAACGGCAGGCAGCGGCUGUUGUUGCCACCACAGAGGGGU-- ..((((...((((((((((.....)).))))))))...((((((((.....))))))))..........---.....)))).(((((((.....))))))).((......))..-- ( -31.50, z-score = -1.32, R) >dp4.chr4_group3 2710818 111 - 11692001 GCGCAGAAAGUUGCGAAAAGUUAAAUAUUUGCAACACCUGAAAAAUUGAAUAUUUUUCAUUAAAAGUUU---CCCAACGGCAGGCAGCGGCUGUUGUUGCCACCACAGAGGGGU-- .....((((((((((((.(......).))))))))...((((((((.....)))))))).......)))---).(((((((((.(...).)))))))))((.((.....)))).-- ( -27.50, z-score = -0.43, R) >droAna3.scaffold_12916 1715556 99 + 16180835 CCGCGAAAGGUAUCCGAAUGUUAAAUAUUUGCAACACCUGAAAAAUUGAAUAUUUUUCAUUAAAAGUUGAAAGUUUCCCGCCGGCAGCGGCUGCUGGGG----------------- (((((..((((...(((((((...)))))))....))))(((((((.....)))))))....................)))((((((...)))))))).----------------- ( -22.00, z-score = 0.03, R) >droEre2.scaffold_4929 801218 116 + 26641161 AUUCAGAAAGUUGCAAAAUGUUAAAUAUUUGCAACACCUGAAAAAUUGAAUAUAUUUCAUUAAAAGUGCAAAGUUUUCCGACGGCAGCGGCUGUUGUGGAAACAUUUGUGGAAAAU .(((((...((((((((((.....)).))))))))..)))))....((((.....))))........((((((((((((((((((....))))))).)))))).)))))....... ( -32.50, z-score = -3.41, R) >droYak2.chr2L 729820 110 + 22324452 AUUCAGAAAGUUGCGAAAUGUUAAAUAUUUGCAACACCUGAAAAAUUGAAUAUAUUUCAUUAAAAGUGCAAAGUUUUCCGACGGCAGCGGCUGUUGUGGAAACAUCAGCG------ .(((((...((((((((((.....)).))))))))..)))))....((((.....))))........((...(((((((((((((....))))))).))))))....)).------ ( -29.50, z-score = -2.56, R) >droSec1.super_14 718378 114 + 2068291 AUUCAGAAAGUUGCGAAAUGUUAAAUAUUUGUAACACCUGAAAAAUUGAAUAUAUUUCAUUAAAAGUGCAAAGUUUUCCGACGGCAGCGGCUGUUGUGGAAACAUCAGGAGAAU-- ((((.....((((((((((.....)).)))))))).(((((.....((((.....)))).............(((((((((((((....))))))).)))))).))))).))))-- ( -31.80, z-score = -3.61, R) >droSim1.chr2L 748681 114 + 22036055 AUUCAGAAAGUUGCGAAAUGUUAAAUAUUUGUAACACCUGAAAAAUUGAAUAUAUUUCAUUAAAAGUGCAAAGUUUUCCGACGGCAGCCGCUGUUGUGGAAACAUCACGAGAAU-- .(((((...((((((((((.....)).))))))))..)))))....((((.....))))......(((....(((((((((((((....))))))).))))))..)))......-- ( -28.40, z-score = -2.69, R) >consensus AUUCAGAAAGUUGCGAAAUGUUAAAUAUUUGCAACACCUGAAAAAUUGAAUAUAUUUCAUUAAAAGUGCAAAGUUUUCCGACGGCAGCGGCUGUUGUGGAAACAUCAGGGGAAU__ ...(((...((((((((..........))))))))..)))......((((.....))))..................((.(((((((...)))))))))................. (-14.10 = -14.10 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:06:44 2011