| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,574,262 – 13,574,345 |
| Length | 83 |
| Max. P | 0.610863 |
| Location | 13,574,262 – 13,574,345 |
|---|---|
| Length | 83 |
| Sequences | 3 |
| Columns | 83 |
| Reading direction | forward |
| Mean pairwise identity | 95.98 |
| Shannon entropy | 0.05532 |
| G+C content | 0.45382 |
| Mean single sequence MFE | -20.23 |
| Consensus MFE | -19.25 |
| Energy contribution | -19.03 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.610863 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13574262 83 + 27905053 CGUCGCAAACAAGGGGUAUGUUGUACUCCGGAGGCGUACAAAACAGGGAUAAGAAAGUUUUUUGGAUCCCAAGUACCAGAUAU .(((((......(((((((...)))))))....))).))......(((((..(((.....)))..)))))............. ( -21.10, z-score = -1.52, R) >droSec1.super_12 1536104 83 - 2123299 CGUCGUAAACAAGGGGUAUGUUGUACUCCGGAGGCGUACAAGACAGGGAUAAGAAAGUUUUUGGGAUCCCAAGUACCAGAUAU ..............(((((.((((((.((...)).))))))....(((((..(((....)))...)))))..)))))...... ( -20.00, z-score = -0.91, R) >droSim1.chr3R 19599612 83 - 27517382 CGUCGCAAACAAGGGGUAUGUUGUACUCCGGAGGCGUACAAAACAGGGAUAAGAAAGUUUUUGGCAUCCCAAGUAGCAGAUAU .(((((..((...(((.(((((((((.((...)).)))))...(((((((......))))))))))))))..)).)).))).. ( -19.60, z-score = -1.22, R) >consensus CGUCGCAAACAAGGGGUAUGUUGUACUCCGGAGGCGUACAAAACAGGGAUAAGAAAGUUUUUGGGAUCCCAAGUACCAGAUAU .(((((......(((((((...)))))))....))).))......(((((..(((....)))...)))))............. (-19.25 = -19.03 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:23:14 2011