| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,573,281 – 13,573,341 |
| Length | 60 |
| Max. P | 0.983494 |
| Location | 13,573,281 – 13,573,341 |
|---|---|
| Length | 60 |
| Sequences | 6 |
| Columns | 60 |
| Reading direction | reverse |
| Mean pairwise identity | 82.56 |
| Shannon entropy | 0.34135 |
| G+C content | 0.39488 |
| Mean single sequence MFE | -15.52 |
| Consensus MFE | -9.78 |
| Energy contribution | -11.12 |
| Covariance contribution | 1.33 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.71 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.14 |
| SVM RNA-class probability | 0.983494 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13573281 60 - 27905053 UGACAAUUUAUAGCCGAAUGGUGAAAACCAACGCUGUGAGUUGUGAGCAUAUUUUAUAUU (.((((((((((((....((((....))))..)))))))))))).).............. ( -19.30, z-score = -4.87, R) >droAna3.scaffold_13340 12867599 57 + 23697760 UGACAAUUUAUAGCUCAAUAAGUAAAGCAGCUUACCCGGA--GGGAGGCUAUUUUAUAG- .....................((((((.(((((.(((...--)))))))).))))))..- ( -11.60, z-score = -0.98, R) >droEre2.scaffold_4770 9689029 60 + 17746568 CGACAAUUUAUAGCCGAAUGGCGAAAACCACCGCUGUGAGUUGUGCGCAUAUUUUAUAUG ((((((((((((((.(..(((......)))).)))))))))))).))............. ( -16.20, z-score = -2.36, R) >droYak2.chr3R 2151132 60 - 28832112 UGACAAUUUAUAGCCGGAUGGCGAAAACCGCCGCUGAGAGUUGUGAGCAUAUUUUAUAUG (.(((((((.((((.((.(((......))))))))).))))))).).............. ( -15.00, z-score = -2.10, R) >droSec1.super_12 1535302 60 + 2123299 UGACAAUUUAUAGCCGAAUGGCGAAAACCACCGCUGUGAGUUGUGAGCAUAUUUUAUAUU (.((((((((((((.(..(((......)))).)))))))))))).).............. ( -15.50, z-score = -2.99, R) >droSim1.chr3R 19598659 60 + 27517382 UGACAAUUUAUAGCCGAAUGGCGAAAACCACCGCUGUGAGUUGUGAGCAUAUUUUAUAUU (.((((((((((((.(..(((......)))).)))))))))))).).............. ( -15.50, z-score = -2.99, R) >consensus UGACAAUUUAUAGCCGAAUGGCGAAAACCACCGCUGUGAGUUGUGAGCAUAUUUUAUAUU ..((((((((((((....(((......)))..))))))))))))................ ( -9.78 = -11.12 + 1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:23:13 2011