| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,564,784 – 13,564,888 |
| Length | 104 |
| Max. P | 0.593297 |
| Location | 13,564,784 – 13,564,888 |
|---|---|
| Length | 104 |
| Sequences | 4 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 76.39 |
| Shannon entropy | 0.34695 |
| G+C content | 0.39952 |
| Mean single sequence MFE | -20.90 |
| Consensus MFE | -14.31 |
| Energy contribution | -14.19 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.593297 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13564784 104 + 27905053 AUAAAUACGAGUGGAUAGUUAGUUAGAUAUCACCAUUUUGCACCGUGCAUAAACAUAAAGUGAGAUACUCGUUUUCGAGAGAUGCACUUCUGAGUACCCGUAUU---- ...((((((.(((..(((...((.((((......)))).))...((((((...(((...))).....((((....))))..))))))..)))..))).))))))---- ( -20.00, z-score = -0.56, R) >droSim1.chr3R 19589212 100 - 27517382 AUAAAUACGAGUGGUUAGUUAGAUAGAUAUCACCAUUUUGCACCGUGCAUAAA----GUGCGAGAUACUCGUUUUCGAGAGAUGCACUUCUGAGUAGCCGUAUU---- ............(((((.(((((....((((...(((((((((..........----))))))))).((((....)))).))))....))))).))))).....---- ( -28.20, z-score = -2.78, R) >droYak2.chr3R 2142648 89 + 28832112 --------------AUGAAUAGAUAGAUAUCACCGUUUUGCACCGUGCAUAAA----GUGCGAGAUACUUGUUU-CGAGAGAUGCAGUUUUGAGCACCCGUAUUUUGA --------------..........((((((........(((.....)))....----((((..((.(((.((.(-(....)).))))).))..))))..))))))... ( -15.70, z-score = 0.01, R) >droEre2.scaffold_4770 9680865 86 - 17746568 --------------AUAAACAGACAGAUAUCACCAUUUUGCACCGUGCAUAAA----GUGCGAGAUACUCGUUUUCGAGAGAUGUAGUUUUGAGUACCCGUACC---- --------------.....((((...(((((...(((((((((..........----))))))))).((((....)))).)))))...)))).(((....))).---- ( -19.70, z-score = -2.48, R) >consensus ______________AUAAAUAGAUAGAUAUCACCAUUUUGCACCGUGCAUAAA____GUGCGAGAUACUCGUUUUCGAGAGAUGCACUUCUGAGUACCCGUAUU____ ...............((.(((((....((((...(((((((((..............))))))))).((((....)))).))))....))))).))............ (-14.31 = -14.19 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:23:11 2011