| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,554,667 – 13,554,759 |
| Length | 92 |
| Max. P | 0.824997 |
| Location | 13,554,667 – 13,554,759 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 65.87 |
| Shannon entropy | 0.61525 |
| G+C content | 0.34492 |
| Mean single sequence MFE | -18.87 |
| Consensus MFE | -9.43 |
| Energy contribution | -9.68 |
| Covariance contribution | 0.26 |
| Combinations/Pair | 1.52 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.824997 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13554667 92 + 27905053 GUUUUAGUU--------GUGAUUU---------UGACUAAAAUGAAGUUACCCAC---UAACUUUAUU---AAUAACUACUAACAGCCAAAGUUCAAGAUCACAGAAUGUCAAAG-- .......((--------(((((((---------(((((..((((((((((.....---))))))))))---.....((......))....)).))))))))))))..........-- ( -19.40, z-score = -2.88, R) >droEre2.scaffold_4770 9670398 98 - 17746568 GUUUUAGAUUGAUUGAAGUGAUUUCGACU----CCCAUGAAAUUAGGUUACCCAC---UAACUUUAUU---AAUAACUGC-------CAAAGUUCAAGAUGCCACAAUGCCAACG-- ((..((..((((.(((((((((((((...----....))))))).((....))..---..))))))..---....(((..-------...)))))))..))..))..........-- ( -9.80, z-score = 0.98, R) >droYak2.chr3R 2132485 102 + 28832112 GUUUUAGAUUGA----AGUGAUUUUGACU----UCCCUGAAAUUAGGUUACCCAC---UAACUUUAUU---AAUAGCUGCUAACAGCCAAAGUUCAAGAUCGCAGCAUGGCAAAAG- ......(..((.----.((((((((((((----(...((((.((((........)---))).))))..---....((((....))))..))).))))))))))..))...).....- ( -20.70, z-score = -1.04, R) >droSec1.super_12 1515505 101 - 2123299 GUUUUAGUU--------GUGAUUUUGACUGACAUGACUGAAAUGAAGUUACCCAC---UAACUUUAUU---AAUAACUACUAACAGCCAAAGUUCAAGAUCGCAGAAUGUCAAAG-- .......((--------((((((((((((....((.(((.((((((((((.....---))))))))))---..((.....)).))).)).)).))))))))))))..........-- ( -21.30, z-score = -2.24, R) >droSim1.chr3R 19579630 101 - 27517382 GUUUUAGUU--------GUGAUUUUGACUGACAUGACUGAAAUGAAGUUACCCAC---UAACUUUAUU---AAUAACUACUAACAGCCAAAGUUCAAGAUCGCAGAUGGUCAAAG-- .......((--------((((((((((((....((.(((.((((((((((.....---))))))))))---..((.....)).))).)).)).))))))))))))..........-- ( -21.30, z-score = -1.79, R) >droGri2.scaffold_14830 1257642 114 + 6267026 -CUUUCGACCGAUU--GGGGAUAUUUAGUGUCUUCAGUAAGAGGAAUAUAUAUGUACACAGUUUCAUCUAGAAUGAUUUCAAGCUGAUAAGGUUAAAUGAAUGAAUGAGACAUGAAC -..((((.((.(((--((((((((...)))))))))))....))................(((((((.((...(.((((.((.((....)).)))))).).)).))))))).)))). ( -20.70, z-score = 0.38, R) >consensus GUUUUAGAU________GUGAUUUUGACU____UCACUGAAAUGAAGUUACCCAC___UAACUUUAUU___AAUAACUACUAACAGCCAAAGUUCAAGAUCGCAGAAUGUCAAAG__ .................(((((((((..............((((((((((........))))))))))......((((............))))))))))))).............. ( -9.43 = -9.68 + 0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:23:09 2011