| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,550,003 – 13,550,095 |
| Length | 92 |
| Max. P | 0.888690 |
| Location | 13,550,003 – 13,550,095 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 83.02 |
| Shannon entropy | 0.30483 |
| G+C content | 0.52957 |
| Mean single sequence MFE | -30.82 |
| Consensus MFE | -23.90 |
| Energy contribution | -23.72 |
| Covariance contribution | -0.18 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.888690 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13550003 92 - 27905053 GUGCUUCCCCCGCGUUGGAAGUGGGUGCAUAGCAUCCGCUAAUCCCUUGCCCCUGGUCUUGCCGCA-------------AAAAGUUAAUUGAAGCGCUCGAAAAA (((((((....(((..((((((((((((...)))))))))..)))..)))....((.....))...-------------...........)))))))........ ( -30.50, z-score = -2.74, R) >droEre2.scaffold_4770 9665718 103 + 17746568 GUGCUUCCCCCGCGUUGGAAGUGGGUGCAUGGAAUUCGCUAAUCCCUUGCCCCUG-UCUCGUCGAUGCCUGAAAAGAACAACAAUUAAUUGAAGCGCUCGAAAA- (((((((....(((((((.((.(((.(((.((.(((....))).)).))))))..-.))..)))))))((....))..............))))))).......- ( -29.20, z-score = -2.02, R) >droYak2.chr3R 2127631 99 - 28832112 GUGCUUCCCCUGCCUCGGAAGUGGGUGCAUAGCAUUCGCUAAUCCCUUGCCCCUG-----GUCUCUGCCUGGAAAGAACAACAAUUAAUUGAGGCGCUCAAAAA- (((((((....((...((((((((((((...)))))))))..)))...)).((.(-----((....))).))..................))))))).......- ( -27.60, z-score = -0.76, R) >droSec1.super_12 1510766 105 + 2123299 GUGCUUCCCCCGCCUUGGAAGUGGGUGUAUAGCACUCGCUAAUCCCUUGCCCCUGGUCUCGCCGCGCCCUGGAAAGGUCAAAAAUUAAUUGAAGCGCUCGAAAAA (((((((....((...(((((((((((.....))))))))..)))...))...((..((..(((.....)))..))..))..........)))))))........ ( -32.70, z-score = -1.87, R) >droSim1.chr3R 19574705 105 + 27517382 GUGCUUCCCCCGCGUUGGAAGUGGGUGUAUAGCACUCGCUAAUCCCUUGCCCCUGGUCUCGCCGCGCCCUGGAAAGAGCAAAAAUUAAUUGAGGCGCUCGAAAAA (((((((....(((..(((((((((((.....))))))))..)))..)))...((.(((..(((.....)))..))).))..........)))))))........ ( -34.10, z-score = -1.41, R) >consensus GUGCUUCCCCCGCGUUGGAAGUGGGUGCAUAGCAUUCGCUAAUCCCUUGCCCCUGGUCUCGCCGCGCCCUGGAAAGAACAAAAAUUAAUUGAAGCGCUCGAAAAA (((((((....(((..((((((((((((...)))))))))..)))..)))..................((....))..............)))))))........ (-23.90 = -23.72 + -0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:23:07 2011