| Sequence ID | dm3.chr3R |
|---|---|
| Location | 13,541,925 – 13,542,020 |
| Length | 95 |
| Max. P | 0.933219 |
| Location | 13,541,925 – 13,542,020 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 96.84 |
| Shannon entropy | 0.05124 |
| G+C content | 0.58684 |
| Mean single sequence MFE | -39.95 |
| Consensus MFE | -39.55 |
| Energy contribution | -39.92 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.38 |
| SVM RNA-class probability | 0.933219 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 13541925 95 + 27905053 GGUUGCUGCGGGGGUUGCUGUUGAGGAUGUGGCUGUUGUUGUUGUGGAGGCUUUCCACCUGGCAGCGGCUGGCCAUAGCGAUAUGGAUCCAUGUU .......(((.(((((..(((((....((((((((((((((((((((((...))))))..))))))))).))))))).)))))..))))).))). ( -35.60, z-score = -0.86, R) >droEre2.scaffold_4770 9657230 95 - 17746568 GGUUGCUGCGGCGGUUGCUGUUGAGGAUGUGGCUGUUGCUGCUGUGGAGGCUUUCCGCCUGGCAUCGGCUGGCCAUAGCGAUAGGGAUCCAUGUU ((((.((((((((((..(..........)..))))))))((((((((((((.....))))(((....)))..))))))))..)).))))...... ( -37.00, z-score = -0.25, R) >droSec1.super_12 1502610 95 - 2123299 GGUUGCUGCGGGGGUUGCUGUUGAGGAUGUGGCUGUUGUUGCUGUGGAGGCUUUCCACCUGGCAGCGGCUGGCCAUAGCGAUAGGGAUCCAUGUU .......(((.(((((.((((((....((((((((((((((((((((((...))))))..))))))))).))))))).)))))).))))).))). ( -43.60, z-score = -2.74, R) >droSim1.chr3R 19566541 95 - 27517382 GGUUGCUGCGGGGGUUGCUGUUGAGGAUGUGGCUGUUGUUGCUGUGGAGGCUUUCCACCUGGCAGCGGCUGGCCAUAGCGAUAGGGAUCCAUGUU .......(((.(((((.((((((....((((((((((((((((((((((...))))))..))))))))).))))))).)))))).))))).))). ( -43.60, z-score = -2.74, R) >consensus GGUUGCUGCGGGGGUUGCUGUUGAGGAUGUGGCUGUUGUUGCUGUGGAGGCUUUCCACCUGGCAGCGGCUGGCCAUAGCGAUAGGGAUCCAUGUU .......(((.(((((.((((((....((((((((((((((((((((((...))))))..))))))))).))))))).)))))).))))).))). (-39.55 = -39.92 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:23:05 2011